Topic: qiime Goto Github
Some thing interesting about qiime
Some thing interesting about qiime
qiime,Tutorials on microbiome analysis using the Quantitative Insights Into Microbial Ecology (QIIME) platform
User: andrew10043
qiime,BSc project: metagenomic analysis of urban park soil. Breakdown of some of the code I used can be viewed on this website:
User: astrdhr
Home Page: http://astrdhr.github.io/metagenomics-research
qiime,A fast and scalable phylogenetic tree viewer for microbiome data analysis
Organization: biocore
qiime,Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples
Organization: biocore
Home Page: https://biocore.github.io/qurro
qiime,Sample search by metadata and features
Organization: biocore
qiime,Bioinformatics pipeline for analysis of diatom sequenced data
User: digsci
qiime,Companion notebooks for "Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks"
User: eldeveloper
Home Page: https://www.nature.com/articles/nmicrobiol2016177
qiime,Streamlit app forked for debugging purposes
User: franky1
qiime,A repository containing a demo microbiome workflow for R and Python
User: glickmac
qiime,
User: glickmac
qiime,Analysis of DNA sequencing data obtained from ancient feces of Huecoids and Saladoids, two cultures that lived in the Caribbean before the arrival of Europeans to the region.
User: jessyboricua
qiime,Assign taxonomy with blast, can be used for qiime
User: joseph7e
qiime,MSc - 16S sequence datasets, amplicon analysis, and stats
User: nishattasnim11
qiime,Bash scripts for running QIIME 1.9 and a Snakemake workflow to automate it using singularity container images.
User: olabiyi
qiime,Singularity Recipe for QIIME 2
Organization: researchit
Home Page: https://www.singularity-hub.org/collections/453
qiime,The source code for the MIND pipeline paper
Organization: segrelab
qiime,A semi-automated protocol to get Qiime-formatted MaarjAM database of Arbuscular Mycorrhizal Fungi
User: sghignone
qiime,Tools for phylogenetic data analysis including visualization and cluster-computing support.
User: smdabdoub
Home Page: http://phylotoast.org
qiime,This is an automatic pipeline for analysis of amplicon sequence data including 16S, 18S and ITS. It wraps QIIME commands and complements them with additional analysis where QIIME is not good at, such as combine multiple sequencing runs, OTU clustering and chimeric removal with UP ARSE, alignment filtering with Gblock, removing Chloroplast sequences.
User: tianrenmao
qiime,Ultra fast program to generate publication ready taxonomic pie charts from QIIME.
User: xcelris-labs-ltd
Home Page: https://github.com/Xcelris-Labs-Ltd/Publication-ready-taxonomic-charts-from-QIIME
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