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Hello!

I'm a human (as far as I know, and as far as you know...). I like data and dancing. They haven't yet occurred simultaneously, but there is time yet 💅

The longer I code, the fewer strong opinions I have on what code should look like. But I do like good documentation and simplicity. I also think it can often be wise to be a lazy programmer. For example, producing code when there is a good reason to.

Leah Kemp's Projects

adipose_ont_methylation icon adipose_ont_methylation

Analysis documentation for research into human adipose nanopore methylation. Oxford Nanopore Technologies (ONT), human, adipose, germline, adaptive sampling data.

assembly icon assembly

Pipelines for assembling NGS data from Seattle flu study.

current_pipelines icon current_pipelines

A review of the current pipelines/tools available for analysing DNA/RNA data.

esr_human_genomics icon esr_human_genomics

An initial place to collate projects associated with the Human Genomics group at ESR

forensics_road_crashes_starter icon forensics_road_crashes_starter

A bit of starter code to help a colleague get started wrangling and extracting summary statistics from a road crash dataset in R.

guinea_pore_c icon guinea_pore_c

Analysis documentation for part of the reference genome assembly of the humble guinea pig. Oxford Nanopore Technologies (ONT) pore-c data.

hyperparathyroid_analysis_20221102 icon hyperparathyroid_analysis_20221102

Analysis documentation for research into the variants associated with hyperparathyroidism. Illumina, germline, human, whole exome sequence (WES) data from the CCDHB.

ont_human_workflow icon ont_human_workflow

A generic best practice workflow for processing human Oxford Nanopore Technologies (ONT) sequencing data.

pipeface icon pipeface

Nextflow pipeline to align, variant call (SNP's, indels's, SV's) and phase long read ONT and/or pacbio HiFi data

pipeline_wrapper_scripts icon pipeline_wrapper_scripts

Wrapper scripts to automate some aspects of running human_genomics_pipeline and vcf_annotation_pipeline.

talks_etc icon talks_etc

A place for talks, blurbs, bios etc related to work at ESR.

test_sv_callers icon test_sv_callers

Testing structural variant (SV) callers for illumina germline whole genome sequence (WGS) data (human).

trevallyapp icon trevallyapp

An R Shiny app that presents a few key results of my MSc thesis.

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