biocorecrg Goto Github PK

.github

advanced_linux_2019

Advanced linux course for biologists and genomics data formats

allele_specific_rnaseq

Allele Specific RNAseq

avocado

Analysis on avocado samples

awesome-nextflow

A curated list of nextflow based pipelines

bento

Packer templates for building minimal Vagrant baseboxes for multiple platforms

bioconda-recipes

Conda recipes for the bioconda channel.

biocorecrg.github.io

CRG's Bioinformatics Core facility GitHub web-page

bionextflow

A collection of modules and sub-workflows for Nextflow

c4lwg-2018

Hands-on tutorial on Nextflow and Containers (Docker and Singularity). Paris 2018.

callings-nf

GATK RNA-Seq Variant Calling in Nextflow

containers-course

Course on Linux containers for scientific environments

contamination-nf

Nextflow pipeline for checking contamination problems with reads among other tasks

coursescrg_containers_nextflow_may_2021

Slow-paced 4-day containers and Nextflow course for beginners.

coursescrg_containers_nextflow_may_2022

Slow-paced containers and Nextflow course for beginners.

crg_containers_june_2022

Scientific Containers CRG Internal Course

crg_containers_october_2022

Scientific Containers CRG Internal Course

crg_nextflow_june_2022

Nextflow course

crg_r_tidyverse_2021

Introduction to the "tidyverse" set of packages.

crg_rintroduction

crg_rintroduction_2021

diamond_docker

Diamond aligner Docker image

docker-almalinux-perlbrew

Images for running Perlbrew scripts using Almalinux.

docker-amazonlinux-perlbrew

Basic Docker image for running AmazonLinux with perlbrew installed

docker-backup-scripts

Scripting to backup all your running containers

docker-centos-legacy-perlbrew

Legacy repository for CentOS 7 Docker builds

docker-debian-perlbrew

Basic Docker image for running Debian with perlbrew installed

docker-perlbrew-nginx-fcgi

Docker image for hosting Perl-based CGI websites using NGINX and fcgiwrap

docker_emboss

Docker image with emboss tools (+ phylip and vienna RNA)

elixir-workshop-21

Nextflow workflow workshop 2021