Name: Biocore@CRG
Type: Organization
Bio: The Bioinformatics Unit provides researchers at CRG-CNAG/PRBB and external organizations with bioinformatics services and training
Twitter: biocorecrg
Location: Carrer Dr. Aiguader 88, Barcelona, Spain
Blog: https://biocore.crg.cat
Biocore@CRG's Projects
PCA shiny app for larger data sets
pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning
Course on Linux containers in scientific environments for CRG PhD course
Scientific Containers CRG PhD Course 2023
PhD course about genomics format (2022)
PhD course about genomics format 2023
CRG course about Nextflow and Linux containers
This is the dockerfile for Qcloud pipeline
collection of useful R commands
Docker recipe for building R with DiffBind
Docker file for R implementation of GSEA software https://github.com/GSEA-MSigDB/GSEA_R
Material for the RNAseq course
Course for ROPES summer school, May 2023
SANSZPANZ Docker image
First Shiny project.
Allows to generate select form elements with queried semantic values
Nextflow course 2021
Container image with signalp and targetp programs for functional analysis pipelines
Python script for summarising the abundance at different taxonomic levels
Docker for running SUPPA
Biocore's de novo transcriptome assembly workflow based on Nextflow
tRNA Analysis of eXpression
Docker for running VAST-TOOLS
A pipeline for assembling and annotation of vectors
Violin / Box plots with ggplot in a Shiny app
Shiny apps