algbio Goto Github PK
Name: Algorithmic Bioinformatics Group @ University of Helsinki
Type: Organization
Location: Helsinki, Finland
Name: Algorithmic Bioinformatics Group @ University of Helsinki
Type: Organization
Location: Helsinki, Finland
Badger is a long read barcode calling tool
Bidirectional Burrows-Wheeler index
MEM finding on texts and graphs using bidirectional r-index
Space-efficient clustering for metagenomic reads
MEM finding on (elastic founder) graphs
EMERALD calculates safety-windows by exploring the suboptimal alignment space
Constructs segment repeat-free founder block graphs from multiple sequence alignments
Compacted and colored de Bruijn graph construction and querying
An accurate aligner of long reads to a variation graph, based on co-linear chaining
Greedy space-efficient construction of short approximate superstrings
Genome assembly - From theory to practice (and back)
A fork of KMC used in the SBWT repository https://github.com/algbio/SBWT
Minimum plain text representation of kmer sets
MetaFlow is a program for community profiling of a metagenomic sample
Fast and exact ILP-based solvers for the Minimum Flow Decomposition problem, and variants of it.
Instructions and examples for using PanVC with founder sequences
Sample variant calling workflow using short reads for PanVC
Experiments for evaluating PanVC 3
Efficient C++ implementations of different fast algorithms for Minimum Path Cover
A repository to conduct experiments with omnitig-related models for genome assembly.
Flow Decomposition Under Uncertainty
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.