Topic: minimizers Goto Github
Some thing interesting about minimizers
Some thing interesting about minimizers
minimizers,Minimizer counting and analysis
Organization: at-cg
minimizers,Minimizer-based assembly scaffolding and mapping using long reads
Organization: bcgsc
minimizers,BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGAB https://doi.org/10.1093/nargab/lqad004)
Organization: cmu-safari
minimizers,GateSeeder is the first near-memory CPU-FPGA co-design for alleviating both the compute-bound and memory-bound bottlenecks in short and long-read mapping. GateSeeder outperforms Minimap2 by up to 40.3×, 4.8×, and 2.3× when mapping real ONT, HiFi, and Illumina reads, respectively.
Organization: cmu-safari
minimizers,Extract kmers, skipmers, minimizers.
Organization: dib-lab
minimizers,Evaluation tools for "A performant bridge between fixed-size and variable-size seeding"
Organization: itbe-lab
minimizers,A collection of minimizer-based sampling algorithms.
User: jermp
minimizers,Repository to host the project for "Bioinformatics", a course @ FER
User: joao-conde
Home Page: https://www.fer.unizg.hr/en/course/bio
minimizers,Code to create polar sets for genome sketching.
Organization: kingsford-group
minimizers,ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
User: pirovc
Home Page: https://pirovc.github.io/ganon/
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