mcveanlab Goto Github PK
Name: McVean Lab
Type: Organization
Location: Oxford, UK
Name: McVean Lab
Type: Organization
Location: Oxford, UK
Germline DNM caller based on LdBG assembly of pathogens
dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
An R interface for dEploid. dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
De novo genome assembly and multisample variant calling
Supplementary material for mixedIBD paper
A reimplementation of Hudson's classical ms simulator for modern data sets.
Assessments of PacBio datasets
PfDeconv is now renamed as DEploid.
Code used in Scmidt Science Fellowship workshop
Builds a docker image out of the schmidtWorkshop repo
A library of standard simulation models for msprime
Work for the tree sequence inference paper.
Repository for our manuscript 'Systematic classification of shared components of genetic risk for common human diseases'.
JupyterHub infrastructure for tskit workshops
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.