Is this meant to say Probable instead of Probably?

List in 3.3.4 Simulation of a Robot is off

Figure 5 subtitles aren't displaying Greeks alphabets properly

This is an issue to track progress on automatically converting the book to LaTeX using https://mystmd.org. There are updates needed for (1) the mystmd processor, (2) configuration changes in this repository and minor content changes; (3) theme changes if/when mystmd is adopted for the HTML rendering (e.g. with hover previews).

Features needed for MyST Markdown CLI

• Reading HTML (fig, image, figcaption, anchors with internal IDs) jupyter-book/mystmd#680
• Removing/hiding cells jupyter-book/mystmd#681
• Hide cells in latex (collab button) jupyter-book/mystmd#685
• improve image writing jupyter-book/mystmd#721
• Read HTML from outputs and render in latex
• Reading headers when not in the first cell
• Rendering out as "book/chapter" latex (with includes for each chapter)
• multi/sub-figures, should work in latex as well (\begin{code}[h] bug)

LaTeX Improvements

• Add spaces around tables without captions jupyter-book/mystmd#686
• Share files in latex build jupyter-book/mystmd#683
• no boxes around links
• smartquotes for latex export jupyter-book/mystmd#727
• Allow for latex setting overrides, e.g. on minted code jupyter-book/mystmd#764
• Fix captions for unnumbered figures jupyter-book/mystmd#763
• Fig cross-reference prefixes: https://github.com/myst-ext/myst-ext-xref-prefix

Content Changes

• Change figure IDs from <img> to <figure>, remove duplicates #42
• add no-tex tag to all collab cells #42 #51
• change to no-pdf tag to support typst
• Run latex export and build in CI

Theme / User Interface Improvements

• Table of contents rendering improvements (for myst-theme) jupyter-book/myst-theme#254
• Open in collab button
• auto thumbnail skips hidden blocks (open in collab is thumbnail everywhere)

Stretch Goals

• add index directive jupyter-book/mystmd#190
• add abbreviations

First sentence in 2.2.2 should be "always" instead of "alway"

Seems like gtsam 4.2a9 is being used, I don't see discreteDistributions in 4.1.0(python version) which is a stable release. I think this should be mentioned as a footnote in readme?

Small typo/error on the second paragraph of 2.1.4. Probability Distributions in Python: "GTSAM It also provides...":

Believe it should either be "GTSAM also provides..." or "It also provides...". Thank you.

Formatting issue

I believe this is supposed to say inference instead of inferemce.

Your issue content here.

In Section 3.4.1, the Bayes Net indicates the conditional $P(W | X, \textbf{Z}) $ whereas the table describing the posterior P(X, Y | w, z) uses conditional $P(W | X, \textbf{Y})$:

Bayes Net:

wxyz.add(W1, [X1, Z1], "1/1 1/1 1/1 1/1")
wxyz.add(X1, [Y1, Z1], "1/1 1/1 1/1 1/1")
wxyz.add(Y1, [Z1], "1/1 1/1")
wxyz.add(Z1, "1/1")

Table describing the posterior P(X, Y | w, z):

And also in Exercise 1 (3.4.1.1),

1. Show that in the example above, if we condition on known values for $\mathcal{Z}=(X,Y)$, the
   posterior $P(W,Z|X,Y)$ factors, and as a consequence we only have to
   enumerate two tables of length 10, instead of a large table of
   size 100.

If the Bayes Net is supposed to be $P(W | X, Y)$ then this makes sense / can factorize, but if it's supposed to be $P(W | X, Z)$, then I think the exercise should read "... $\mathcal{Z}=(X, Z)$, the posterior $P(W, Y | X, Z)$ factors..."

Perhaps I misunderstood the exercise, but I think I am correctly understanding (that conditioning on a separating set of variables disconnects the graph to allow efficient factorization) based on the "hint" in exercise 3:

3. Show that if we are given the states, inferring the actions is actually quite efficient, even with the brute force enumeration. Hint: this is similar to the first exercise above.

In the sample function it lists [x1, x1, x3] instead of [x1, x2, x3]. Is this intentional?

Interactive elements do not work in notebook. Also getting below error in both Brave & plain Chromium.

Error x4:

Uncaught (in promise) TypeError: Cannot read properties of undefined (reading 'Queue')
at r (embed-amd.js:127:8886)
at embed-amd.js:127:10882

png works, but is not interactive. I know plotly can work with

import plotly.io as pio
pio.renderers.default = "notebook"

but I suspect some version issue with our environment.yml. Needs to be figured out by checking our dependencies one by one I think.

Section 3.3.4 has a typo, all steps are labeled "1."