Topic: alignment-free Goto Github
Some thing interesting about alignment-free
Some thing interesting about alignment-free
alignment-free,genotyping by Mapping-free ALternate-allele detection of known VAriants
Organization: algolab
Home Page: https://algolab.github.io/malva/
alignment-free,A fast and accurate tool for genotyping haploid individuals (such as SARS-CoV-2)
Organization: algolab
Home Page: https://algolab.github.io/MALVIRUS
alignment-free,Mapping-free software for fishing relevant reads in an RNA-Seq sample
Organization: algolab
Home Page: https://algolab.github.io/shark
alignment-free,
User: amatur
alignment-free,Alignment-Free RGBT Salient Object Detection: Semantics-guided Asymmetric Correlation Network and A Unified Benchmark
User: angknpng
alignment-free,Deep learning based alignment-free method for protein family modeling and prediction
Organization: bhi-kimlab
Home Page: https://bhi-kimlab.github.io/DeepFam/
alignment-free,Supplementary data for "A survey and evaluations of histogram-based statistics in alignment-free sequence comparison"
Organization: bioinformaticstoolsmith
Home Page: https://doi.org/10.1093/bib/bbx161
alignment-free,Fast and Accurate Search Tool for Classification And Regression in global sequence similarity
Organization: bioinformaticstoolsmith
Home Page: https://doi.org/10.1101/380824
alignment-free,MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
Organization: bioinformaticstoolsmith
Home Page: https://doi.org/10.1101/451278
alignment-free,Alignment-free bacterial identification and classification in metagenomics sequencing data using machine learning
Organization: bioinfouqam
alignment-free,Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences
Organization: bioinfouqam
alignment-free,rSWeeP is an alignment-free method for the vector representation of the biological sequences (amino acid and nucleotide).
User: camilapperico
Home Page: https://aibialab.github.io/rSWeeP
alignment-free,A neural network for alignment-free, kingdom-level classification of eDNA
User: cnuge
alignment-free,Alignment-free simulation, computation, and visualization of Low-compexity regions in biological data
Organization: cobilab
alignment-free,AltaiR: a C toolkit for alignment-free and temporal analysis of multi-FASTA data
Organization: cobilab
alignment-free,A memory efficient tool to map and visualize evolutionary regions
Organization: cobilab
Home Page: http://pratas.github.io/chester
alignment-free,A tool to infer metagenomic sample composition
Organization: cobilab
alignment-free,A tool for compression and analysis of DNA sequences
Organization: cobilab
alignment-free,An ultra-fast and high-sensitive tool to filter specific DNA content
Organization: cobilab
alignment-free,♥ Efficient Estimation of Evolutionary Distances
Organization: evolbioinf
alignment-free,♥ Fast and Accurate Estimation of Evolutionary Distances
Organization: evolbioinf
alignment-free,R package for alignment-free analysis of genomic data
User: gaojunxuan
alignment-free,:chart_with_downwards_trend: Disk Storage of Compressed k-mer Dictionaries, with or without Random Access in Main Memory.
User: gengrim76
alignment-free,Generalized k-mer return time distribution (RTD) calculation library
Organization: iqtlabs
Home Page: https://iqtlabs.github.io/librtd
alignment-free,subset and spaced seed design tool
User: laurentnoe
Home Page: https://bioinfo.univ-lille.fr/yass/iedera.php
alignment-free,[Features extraction method] You can find the new version of CASTOR_KRFE at https://github.com/bioinfoUQAM/CASTOR_KRFE
User: maremita
alignment-free,Extract SNPs and accessory differences in closely related bacterial genomes from k-mers
User: moorembioinfo
alignment-free,Scorpio: Advancing Embeddings for Superior Biological Sequence Analysis
User: msalehr
alignment-free,An ensemble method for predicting transcription factor in protein sequences
User: raghavagps
Home Page: http://webs.iiitd.edu.in/raghava/transfacpred
alignment-free,Files from DIMACS 2007 DNA barcoding challenge
User: rdmpage
alignment-free,Alignment-free FASTQ deduplication.
User: rhpvorderman
alignment-free,Fast and accurate tool for estimating genomic distances between genome-skims
User: shahab-sarmashghi
Home Page: https://shahab-sarmashghi.github.io/Skmer/
alignment-free,web application for DNA comparison, alignment and phylogenetic tree. Released on 2020.
User: sirinefoudili
alignment-free,Find and visualize rearrangements in DNA sequences
User: smortezah
alignment-free,Phylogeny reconstruction based on spaced word matches
User: tdencker
alignment-free,A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
Organization: turtletools
Home Page: https://turtletools.github.io/geometricus/
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