maremita Goto Github PK

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Tutorial on amortized optimization for learning to optimize over continuous domains

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Awesome resources on normalizing flows.

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Bayesian Data Analysis course at Aalto

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general purpose library for evaluating the likelihood of sequence evolution on trees

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This repository is for the preprint "A generative nonparametric Bayesian model for whole genomes"

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Bayesian enrichment estimation in R

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Unifying Generative Autoencoder implementations in Python

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Bayesian phylogenetic inference with substitution model over-parameterization

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Python-interface C++ library for Bayesian phylogenetics via optimization

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Welcome to next-generation biological computation software (https://doi.org/10.1093/molbev/msz020)

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Circular visualization in R

-fork-cmv-transient-infections

Analysis and stochastic models of transient infections in Uganda infants.

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A generative latent variable model for biological sequence families.

-fork-ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

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GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics

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Haplotype RecOnstruction using Longitudinal sequencing Data

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Haplotype Reconstruction of Longitudinal Deep sequencing data

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Interpretable genotype-phenotype landscape modeling

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Inference code for LLaMA models

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19 dubious ways to compute the marginal likelihood of a phylogenetic tree topology

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Source for reproducing results presented in "Large-scale machine learning for metagenomics sequence classification" (Vervier et al., 2016)

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Official Repository of MISELBO - Multiple Importance Sampling ELBO and Deep Ensembles of Variational Approximations

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A library of extension and helper modules for Python's data analysis and machine learning libraries.

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Prediction of Mutation Effects using a Deep Temporal Convolutional Network

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