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advanced-algorithms

bbzip2

stage consiste nel modificare una componente algoritmica di bzip2, sostituendo il passo "burrows-wheeler transform" con bijectiv transform dell'articolo allegato

beetl

BEETL

bwt-lcp-em

Disk-based approach to compute the BWT and the LCP of a set of strings

bwt-lcp-parallel

Multi-threaded approach to compute the BWT and the LCP array of a set of strings

cancer_ea

cancer phylogeny genetic programming

celluloid

Celluloid: clustering single cell sequencing data around centroids

comparison-of-tools-for-tumor-progression-inference

Comparison of Tools for Tumor Progression Inference

complexcgr

complex Chaos Game Representation for DNA sequences

copa24

PhD school on Evolution in Computational Pangenomics

cougar-g

Frequence Chaos Game Representation of DNA with Deep Learning

cppp

Constrained Persistent Perfect Phylogeny

deap

Distributed Evolutionary Algorithms in Python

elementi-bioinformatica

Tutte le informazioni sul corso di Elementi di Bioinformatica (LT Informatica)

esgq

experiments-new-hapcol

for testing and comparing the new hapcol

faststringgraph

FSG, a new Fast String Graph construction algorithm for the String Graph Assembler suite

galig

A graph aligner

gppf

General Parsimony Phylogeny models from Frequencies

gpps

hapchat

Adaptive haplotype assembly for efficiently leveraging high coverage in long reads

hapchat-experiments

Instructions for reproducing the experiments described in the HapCHAT preprint

hapcol

A fast and memory-efficient method for haplotype assembly from long gapless reads.

hapqual

Computing measures of quality of a haplotype phasing with respect to sequencing reads

kfinger

A pipeline for computing overlaps between long reads based on theoretical properties of Lyndon factorizations.

lightstringgraph

Lightweight String Graph Construction

lyndon

malva

genotyping by Mapping-free ALternate-allele detection of known VAriants

malva_experiments

malvirus

A fast and accurate tool for genotyping haploid individuals (such as SARS-CoV-2)