Topic: flux-balance-analysis Goto Github
Some thing interesting about flux-balance-analysis
Some thing interesting about flux-balance-analysis
flux-balance-analysis,Bi-level regularized flux balance analysis of Synechococcus spp. PCC 7002
Organization: angione-lab
flux-balance-analysis,This repository introduces the codes applied to the nasal microbial community of the latest available curated GEMs of D. pigrum and S. aureus.
User: biomathsys
flux-balance-analysis,Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations
Organization: biosimulations
Home Page: https://docs.biosimulations.org/repositories/bigg
flux-balance-analysis,CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Organization: biosimulators
Home Page: https://docs.biosimulators.org/Biosimulators_CBMPy
flux-balance-analysis,COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Organization: biosimulators
Home Page: https://docs.biosimulators.org/Biosimulators_COBRApy
flux-balance-analysis,Library to perform metabolic engineering tasks
Organization: brsynth
flux-balance-analysis,
User: cfrioux
flux-balance-analysis,An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
Organization: cnapy-org
Home Page: https://cnapy-org.github.io/CNApy-guide/
flux-balance-analysis,Adjusting for false discoveries in constraint- and sampling-based differential metabolic flux analysis
Organization: compbtbs
flux-balance-analysis,Flux Capacitor toolkit for systems biology
User: daormar
Home Page: https://daormar.github.io/flux-capacitor/
flux-balance-analysis,
User: divya1694
flux-balance-analysis,This repository contains all changes made to the strain specific models of Corynebacterium striatum.
Organization: draeger-lab
flux-balance-analysis,pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.
Organization: draeger-lab
flux-balance-analysis,The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.
Organization: draeger-lab
Home Page: https://draeger-lab.github.io/SBSCL/
flux-balance-analysis,A demo repository with example code for using the Systems Biology Simulation Core Library (SBSCL).
Organization: draeger-lab
Home Page: https://draeger-lab.github.io/SBSCL/
flux-balance-analysis,Repositório para apresentação de código e posterior análise, desenvolvido pelo grupo 1 para a UC Biologia de Sistemas, do Mestraddo em Bioinformática, ano lectivo 23-24.
User: duartebred
Home Page: https://github.com/duartebred/fba-Flux-Balance-Analysis
flux-balance-analysis,:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
User: franciscozorrilla
Home Page: https://franciscozorrilla.github.io/metaGEM/
flux-balance-analysis,An R package to incorporate in a continuous way the gene-expression data as FBA flux boundaries in a metabolic model. Also, functions to calculate and plot the differences between model fluxes in different metabolic scenarios was included. This is an implementation of the algorithm described by Lee et al. (2012) in DOI: 10.1186/1752-0509-6-73.
Organization: gibbslab
flux-balance-analysis,A collection of supplementary script files of publications
User: he-hai
flux-balance-analysis,
User: inoue0426
flux-balance-analysis,Matlab code and data to reproduce results from "Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM" by Dreyfuss, Zucker, et al.
User: jdreyf
Home Page: http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003126
flux-balance-analysis,Python Implementation of PROM
User: jseidel5
flux-balance-analysis,iJV803: a genome-scale metabolic model for Methylomicrobium album BG8
User: juanvillada
Home Page: https://juanvillada.github.io/iJV803
flux-balance-analysis,Python implementation of mgpipe
Organization: korem-lab
Home Page: https://korem-lab.github.io/pymgpipe/
flux-balance-analysis,A sequential gene scanner for both gene deletions and upregulations, based on flux balance analysis
User: lucodevro
flux-balance-analysis,S. cerevisiae Resource Balance Analysis model
Organization: maranasgroup
flux-balance-analysis,
Organization: maranasgroup
flux-balance-analysis,Dynamically load balanced FVA through a hybrid MPI/OpenMP architecture.
User: marouenbg
flux-balance-analysis,Constraint Logic Programming for Flux Balance Analysis
User: maurodinuzzo
flux-balance-analysis,Constraint-based modeling of metabolism using Mixed Integer Optimization
Organization: metexplore
Home Page: https://metexplore.github.io/miom
flux-balance-analysis,TRIMER is a package for building integrated metabolic–regulatory models base on Bayesian network. TRIMER can be used for knockout phenotype prediction and knock flux prediction.
User: niupuhua1234
flux-balance-analysis,Constraint-based model vulnerabilities analysis - Python analysis tool http://contrabass.unizar.es
Organization: opencontrabass
Home Page: https://contrabass.readthedocs.io
flux-balance-analysis,A RMosek optimization interface for the Sybil package
User: r2rahul
flux-balance-analysis,Python implementation of FastSL
Organization: ramanlab
flux-balance-analysis,Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models
User: rcolpo
Home Page: https://pgprec.bioinf.uni-leipzig.de/
flux-balance-analysis,EMILiO
User: shyamsrinivasan
Home Page: https://github.com/shyamsrinivasan/emilio
flux-balance-analysis,Analysis of neutrophil metabolic activity during metastasis using single-cell RNASeq and COnstraint-Based Reconstruction and Analysis.
Organization: sriram-lab
flux-balance-analysis,Shiny app for visualization of the toy GENREs
User: stolarczyk
Home Page: https://stolarczyk.github.io/metaboLITE/
flux-balance-analysis,Source code and information for journal article Social dynamics and modeling of chrono-nutrition
User: svijayakumar32
Home Page: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006714
flux-balance-analysis,Bi-level regularized flux balance analysis of Synechococcus spp. PCC 7002
User: svijayakumar32
flux-balance-analysis,KMG060 Systems Biology course - repo for students
Organization: sysbiochalmers
flux-balance-analysis,Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae
Organization: sysbiomics
Home Page: https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-9-245
flux-balance-analysis,This collection of tools forms the basis of a pipeline for the complete enumeration of the number of solutions present in a model that maximizes a single objective function
Organization: systemsbioinformatics
Home Page: http://memesa-tools.sourceforge.net/
flux-balance-analysis,Figure 5 - Learning to read and write in evolution: from static pseudoenzymes and pseudosignalers to dynamic gear shifters
User: thierrymondeel
flux-balance-analysis,"Maps for when the living gets tough: Maneuvering through a hostile energy landscape" | Mondeel, Thierry D.G.A. Rehman, Samrina Zhang, Yanfei Verma, Malkhey Dürre, Peter Barberis, Matteo Westerhoff, Hans V. | 2016 | IFAC-PapersOnLine |
User: thierrymondeel
Home Page: http://dx.doi.org/10.1016/j.ifacol.2017.03.002
flux-balance-analysis,Simultaneous Integration of Gene Expression and Nutrient Availability for Studying the Metabolism of Hepatocellular Carcinoma Cell Lines | Ewelina Węglarz-Tomczak, Thierry D.G.A. Mondeel, Diewertje G.E. Piebes, Hans V. Westerhoff | Biomolecules 2021
User: thierrymondeel
Home Page: https://doi.org/10.3390/biom11040490
flux-balance-analysis,Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam
User: thierrymondeel
Home Page: https://thierrymondeel.github.io/Systems_Biology_FBA_tutorial/
flux-balance-analysis,Core cancer metabolism model of Palsson et al: https://rdcu.be/Olwc
User: varnerlab
flux-balance-analysis,An exploration of using FBA to engineer E. coli's metabolism in Julia
User: xlxs4
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