Topic: constraint-based-modeling Goto Github
Some thing interesting about constraint-based-modeling
Some thing interesting about constraint-based-modeling
constraint-based-modeling,Constraint-solver to solve the problem of Field Missions-UAV-Pilot Scheduling
User: anirudh2312
constraint-based-modeling,COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Organization: biosimulators
Home Page: https://docs.biosimulators.org/Biosimulators_COBRApy
constraint-based-modeling,EMBL GEMs: A collection of GEnome-scale Models for bacterial species
User: cdanielmachado
constraint-based-modeling,Genome-scale metabolic model of Methylococcus capsulatus.
User: christianlieven
constraint-based-modeling,An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
Organization: cnapy-org
Home Page: https://cnapy-org.github.io/CNApy-guide/
constraint-based-modeling,
Organization: cnapy-org
constraint-based-modeling,COnstraint Based Reconstruction and EXascale Analysis (in Julia)
Organization: cobrexa
Home Page: https://cobrexa.github.io/COBREXA.jl/stable/
constraint-based-modeling,This repository contains all changes made to the strain specific models of Corynebacterium striatum.
Organization: draeger-lab
constraint-based-modeling,pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.
Organization: draeger-lab
constraint-based-modeling,The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.
Organization: draeger-lab
Home Page: https://draeger-lab.github.io/SBSCL/
constraint-based-modeling,MOOMIN is a tool for analysing differential expression data
User: htpusa
constraint-based-modeling,From differential gene expression to metabolic changes
User: htpusa
constraint-based-modeling,A constraint solver for Dishonored 2's Jindosh Riddle.
User: kb9
constraint-based-modeling,Constraint-Based Reconstruction and EXascale Analysis
Organization: lcsb-biocore
Home Page: http://bit.ly/COBREXA
constraint-based-modeling,S. cerevisiae Resource Balance Analysis model
Organization: maranasgroup
constraint-based-modeling,
Organization: maranasgroup
constraint-based-modeling,Software developed and main results obtained in the Master dissertation: A model validation pipeline for healthy tissue genome-scale metabolic models. Dissertation link to be added.
User: mariapessoa
constraint-based-modeling,Dynamically load balanced FVA through a hybrid MPI/OpenMP architecture.
User: marouenbg
constraint-based-modeling,Diversity-based enumeration of optimal context-specific metabolic networks
Organization: metexplore
constraint-based-modeling,diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library
Organization: metexplore
Home Page: https://forgemia.inra.fr/metexplore/cbm/dexom-python
constraint-based-modeling,Constraint-based modeling of metabolism using Mixed Integer Optimization
Organization: metexplore
Home Page: https://metexplore.github.io/miom
constraint-based-modeling,
User: nirjarigandhi
constraint-based-modeling,High-level, high-performance, constraint-based reconstruction and analysis in Julia
Organization: opencobra
Home Page: https://git.io/COBRA.jl
constraint-based-modeling,Repository of tutorials for The COBRA Toolbox
Organization: opencobra
Home Page: https://git.io/COBRA.tutorials
constraint-based-modeling,The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
Organization: opencobra
Home Page: https://opencobra.github.io/cobratoolbox
constraint-based-modeling,Constraint-based modeling of photorespiratory mutants using metabolomics in TMFA
User: pwendering
constraint-based-modeling,Impose constraints on enzyme abundances ratios in enzyme-constraint metabolic models
User: pwendering
constraint-based-modeling,Genome-scale metabolic reconstruction of Rhizophagus irregularis
User: pwendering
constraint-based-modeling,A RMosek optimization interface for the Sybil package
User: r2rahul
constraint-based-modeling,Rule-Based Cebuano POS Tagger using Constraint-Based Grammar
User: rjrequina
constraint-based-modeling,A Python framework for structural systems biology
Organization: sbrg
Home Page: http://ssbio.readthedocs.io/en/latest/
constraint-based-modeling,EMILiO
User: shyamsrinivasan
Home Page: https://github.com/shyamsrinivasan/emilio
constraint-based-modeling,Determination of product-growth-coupled strain designs employing stoichiometric metabolic models.
User: spherotob
constraint-based-modeling,Modeling the metabolic changes during the epithelial-to-mesenchymal transition.
Organization: sriram-lab
Home Page: https://sriram-lab.github.io/emt-cobra/
constraint-based-modeling,Integrating the transcriptional regulatory network with genome-scale metabolic models.
Organization: sriram-lab
constraint-based-modeling,Constraint-based metabolic modeling software from the Chandrasekaran Lab
Organization: sriram-lab
Home Page: https://www.sriramlab.org/
constraint-based-modeling,A lightweight interface to eQuilibrator and equilibrator_api through Julia.
User: stelmo
constraint-based-modeling,Visualization of metabolic models in Makie.
User: stelmo
constraint-based-modeling,Code and data for in silico strain design for enhanced production of +100 typical bio-products with yeast as a cell-factory. Predictions are based on the ecYeastGEM model avaiable at ecModels.
Organization: sysbiochalmers
constraint-based-modeling,Collection of scripts for reproduction of simulation results in "Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0".
Organization: sysbiochalmers
constraint-based-modeling,The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
Organization: sysbiochalmers
Home Page: http://sysbiochalmers.github.io/RAVEN/
constraint-based-modeling,Genome-scale metabolic model of Rhodotorula toruloides
Organization: sysbiochalmers
constraint-based-modeling,Genome-scale model of Yarrowia lipolytica.
Organization: sysbiochalmers
Home Page: http://www.nature.com/articles/npjsba20165
constraint-based-modeling,Programming interface to resource allocation modelling with the Resource Balance Analysis (RBA) method. This is version 1.0.3
Organization: sysbioinra
Home Page: https://sysbioinra.github.io/rbatools/
constraint-based-modeling,CBMPy is a Python based platform for constraint based modelling and analysis.
Organization: systemsbioinformatics
Home Page: https://systemsbioinformatics.github.io/cbmpy/
constraint-based-modeling,
User: taketam
constraint-based-modeling,Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam
User: thierrymondeel
Home Page: https://thierrymondeel.github.io/Systems_Biology_FBA_tutorial/
constraint-based-modeling,Safe Pontryagin Differentiable Programming (Safe PDP) is a new theoretical and algorithmic safe differentiable framework to solve a broad class of safety-critical learning and control tasks.
User: wanxinjin
Home Page: https://wanxinjin.github.io/posts/safePDP
constraint-based-modeling,A Python Library for modeling combinatorial constrained problems
User: xcsp3team
Home Page: https://www.pycsp.org
constraint-based-modeling,Models (and data) of constrained problems developped with the library PyCSP3
User: xcsp3team
Home Page: https://www.pycsp.org
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