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artenolis

Automated Reproducibility and Testing Environment for Licensed Software

cobra-component-models

Provide SQLAlchemy ORM and pydantic data models for SQL storage and serialization of COBRA components such as reactions, compounds, and compartments.

cobra.binary

Linux, Windows and Mac binaries maintained by the constraint-based reconstruction and analysis community

cobra.java

Constraint-based reconstruction and analysis via Java

cobra.jl

High-level, high-performance, constraint-based reconstruction and analysis in Julia

cobra.models

Set of models used for testing COBRA code in continuous integration environments

cobra.papers

Repository for scripts related to reproducing the results of an individual publication

cobra.tutorials

Repository of tutorials for The COBRA Toolbox

cobrapy

COBRApy is a package for constraint-based modeling of metabolic networks.

cobrapy-bigg-client

cobrapy-scope

Evaluation of a user survey from 2020 on what scope of methods is desirable in COBRApy.

cobrapy-website

cobrapy_shim

Shim for the COBRA toolbox to call cobrapy functions

cobratoolbox

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

cookiecutter-memote

A cookiecuttter template for memote model repositories

cookiecutter-python-package

Extensive cookiecutter template for openCOBRA Python packages.

ctf

Chemical table files for constraint-based modelling

driven

Data-Driven Constraint-based analysis

escher

jeweler

Test and grade genome-scale metabolic models (GEMs).

kb_memote

m_model_collection

A collection of M models downloaded from published studies

mass-toolbox

Mass Action Stoichiometric Simulation (MASS) Toolbox

massef

matlab.devtools

MATLAB Development Tools

medusa

Analysis of ensembles of metabolic network reconstructions

memote

memote – the genome-scale metabolic model test suite

memote-docker

Easily use the memote command line interface from a docker container.

memote-webservice

Run memote in a microservice with a frontend that allows you to upload and test models.

opencobra.github.io

Official openCOBRA website