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Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models

Home Page: https://pgprec.bioinf.uni-leipzig.de/

License: Other

Python 100.00%

bioinformatics community-simulations computational-biology fba flux-balance-analysis genome-scale-metabolic-model genome-scale-model metabolic-modeling metabolic-models metabolism

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no access to some files on external server

Hi,

I tried to use the tool, but it seems that I don't have permission to access some of the files on the external server that will be downloaded during the first run. This applies to the files swiss90tremble50SeqInfo.pickle, swiss90Tremble50WithRhea.fasta and SwissProtIds.pickle. Also, the URL to cplex_solver.py does not exists on the external server.

Do you have an idea on how I can solve this problem? Thanks!

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