Topic: pfam Goto Github
Some thing interesting about pfam
Some thing interesting about pfam
pfam,Scripts to calculate sequence similarity networks (SSNs) and clustering of protein sequences.
Organization: bateman-research
pfam,A Bio2BEL package for PFAM (https://pfam.xfam.org/)
Organization: bio2bel
pfam,📦 A Command Line Tool for downloading protein structures, sequences and MSAs
User: biomadeira
pfam,Find NLR hmms in protein sequences.
User: daniel-ze
pfam,A Julia package to analyze protein sequences, structures, and evolutionary information
User: diegozea
Home Page: https://diegozea.github.io/MIToS.jl/stable/
pfam,PFAM's micro service to assist to Mistic2.
User: ecolell
pfam,Minimal benchmark test to compare zstd (zstandard) compression with gzip for the datafile Pfam-A.full.gz
User: eriksjolund
pfam,Protein Family Annotator
User: hamalcij
pfam,CroMaSt (Cross Mapper of domain Structural instances) is an automated iterative workflow to clarify domain definition by cross-mapping of domain structural instances between domain databases.
User: hrishidhondge
Home Page: https://workflowhub.eu/workflows/390
pfam,PARS is a python package for browsing and downloading files deposed in Pfam and Rfam databases (e.g. sequences, alignments, hmm). It has implemented classes dedicated to Pfam data like: PfamFamily or PfamClan. PARS is compatible with Biopython modules, but also is extended by HMMER wrapper which enables convenient usage of downloaded HMM files. One of the advantages of this package is the easy switch to other databases by translation of accession numbers. All of these features enable to make a detailed analysis of proteins or RNA families and deal with large datasets.
User: juliagol
pfam,Mapping domain co-occurrence networks with emphasis on c-d-GMP binding domains.
User: littleblackfish
pfam,Snakemake pipeline for searching genomic sequences for those encoding proteins containing domains of choice
User: michalbukowski
pfam,Set of tools for protein sequence enrichment and protein domain finding
User: mmalejky
pfam,The script will generate and display the phylogeny tree, with MSA and domain distribution labels assigned to the tree leaves.
User: muthusaravanans
pfam,Interactively explore the relationship between a variant of interest, protein structure, and previously reported variants.
User: pearcetm
Home Page: https://pearcetm.github.io/jsproteinmapper
pfam,Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
Organization: refresh-bio
pfam,Method for retrieving and visualising the protein domains of any protein coding isoform and of different genomes. Enables joint visualisations representing alternative splicing events.
User: rubenchazarra
pfam,Imports Pfam into Google BigQuery
User: smsaladi
Home Page: https://bigquery.cloud.google.com/dataset/pfamdb:pfam31
pfam,Co-occurrence of enzyme domains
User: tderond
pfam,A deepchain-app to predict protein family :microscope:
User: theomeb
pfam, An R client for EMBL-EBI's PfamScan API
Organization: uscbiostats
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