Topic: open-science Goto Github

👇 Here are 732 public repositories matching this topic...

aaronpeikert / reproducible-research
open-science,A Reproducible Data Analysis Workflow with R Markdown, Git, Make, and Docker
User: aaronpeikert
Home Page: https://psyarxiv.com/8xzqy/
reproducibility r version-management literate-programming dependency-management containerization open-science

ababaian / serratus
open-science,Ultra-deep search for novel viruses
User: ababaian
Home Page: http://serratus.io
bioinformatics covid19 sars-cov-2 coronavirus aws open-science

anahitasocial / anahita
open-science,Anahita is a platform and framework for developing open science and knowledge sharing applications on a social networking foundation.
Organization: anahitasocial
Home Page: https://www.anahita.io
graph-architecture framework platform knowledge-sharing open-science open-data location-graph social-apps social-networking social-network-graph

asoplata / open-computational-neuroscience-resources
open-science,A publicly-editable collection of open computational neuroscience resources
User: asoplata
neuroscience neuroscience-data neural-simulators neuroimaging-data electrophysiological-data neuroscience-methods computational-neuroscience computational-biology awesome awesome-list

asoplata / open-science-resources
open-science,A publicly-editable collection of open science resources, including tools, datasets, meta-resources, etc.
User: asoplata
open-science science neuroscience awesome awesome-list open-data open-datasets computational-science computational-neuroscience

centerforopenscience / helm-charts
open-science,Kubernetes Helm Charts for the Center for Open Science
Organization: centerforopenscience
kubernetes helm osf open-science helm-charts

cernopendata / opendata.cern.ch
open-science,Source code for the CERN Open Data portal
Organization: cernopendata
Home Page: http://opendata.cern.ch/
big-data digital-library digital-repository flask invenio inveniosoftware json-schema open-data open-research-data open-science python research-data research-data-management research-data-repository

chicago / food-inspections-evaluation
open-science,This repository contains the code to generate predictions of critical violations at food establishments in Chicago. It also contains the results of an evaluation of the effectiveness of those predictions.
Organization: chicago
Home Page: http://chicago.github.io/food-inspections-evaluation/
chicago data-science open-data open-science food-poisoning cdph public-health

codeisscience / code-is-science
open-science,Scientific code needs to be open source and peer reviewed
Organization: codeisscience
Home Page: http://www.codeisscience.com
open-science open-source science javascript elife-sprint-2020 hacktoberfest

commontk / dcmjs
open-science,dcmjs is a javascript cross-compile of dcmtk (dcmtk.org).
Organization: commontk
Home Page: http://dcmjs.org
dicom javascript imaging open-science reproducible-science webassembly asmjs wasm emscripten dcmtk

duartegroup / autode
open-science,automated reaction profile generation
Organization: duartegroup
Home Page: https://duartegroup.github.io/autodE/
computational-chemistry open-science

eclipse / repairnator
open-science,Software development bots for Github. Join the bot revolution! :star2::robot::star2::revolving_hearts:
Organization: eclipse
java program-repair bot ci research open-science kth inria repair hacktoberfest

fedebotu / clone-anonymous-github
open-science,Easily download anonymous Github repositories from https://anonymous.4open.science/ with a GUI interface
User: fedebotu
anonymous double-anonymous double-blind gui macos open-science python scraping windows

google-research / arco-era5
open-science,Recipes for reproducing Analysis-Ready & Cloud Optimized (ARCO) ERA5 datasets.
Organization: google-research
Home Page: https://cloud.google.com/storage/docs/public-datasets/era5
cloud-optimized ecmwf era5 zarr open-science

greenelab / continuous_analysis
open-science,Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.
Organization: greenelab
Home Page: https://greenelab.github.io/continuous_analysis/
supplement continuous-integration reproducibility methodology open-science

gwastro / pycbc
open-science,Core package to analyze gravitational-wave data, find signals, and study their parameters. This package was used in the first direct detection of gravitational waves (GW150914), and is used in the ongoing analysis of LIGO/Virgo data.
Organization: gwastro
Home Page: http://pycbc.org
astronomy physics gravity ligo gravitational-waves pycbc analysis python black-hole neutron-star

hugoblox / hugo-blox-builder
open-science,🚨 GROW YOUR AUDIENCE WITH HUGOBLOX! 🚀 HugoBlox is an easy, fast no-code website builder for researchers, entrepreneurs, data scientists, and developers. Build stunning sites in minutes. 适合研究人员、企业家、数据科学家和开发者的简单快速无代码网站构建器。用拖放功能、可定制模板和内置SEO工具快速创建精美网站！
Organization: hugoblox
Home Page: https://hugoblox.com/templates/
hugo academic theme static-site-generator cms blog-engine github-pages netlify hugo-theme page-builder

inria / awesome-open-science-software
open-science,awesome open list of pointers about open science for software and computational science
Organization: inria
Home Page: https://github.com/INRIA/awesome-open-science-software
computational-science open-science reproducible-experiments reproducible-research

insightsoftwareconsortium / itk
open-science,Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
Organization: insightsoftwareconsortium
Home Page: https://itk.org
itk insight-toolkit image-analysis medical-imaging scientific-computing open-science open-source reproducible-research numfocus cpp

insightsoftwareconsortium / itk-wasm
open-science,High performance spatial analysis in a web browser and across programming languages and hardware architectures
Organization: insightsoftwareconsortium
Home Page: https://wasm.itk.org
input-output insight-toolkit emscripten reproducible-science open-science javascript imaging itk webassembly asmjs

insightsoftwareconsortium / itkwidgets
open-science,An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.
Organization: insightsoftwareconsortium
Home Page: https://itkwidgets.readthedocs.io/
itk insight-toolkit jupyter jupyter-widget image-analysis scientific-computing scientific-visualization open-source open-science reproducible-research

jewettaij / moltemplate
open-science,A general cross-platform tool for preparing simulations of molecules and complex molecular assemblies
User: jewettaij
Home Page: http://www.moltemplate.org
molecule-builder lammps molecular-dynamics force-fields coarse-grained-molecular-dynamics molecule-editor opls amber open-science lammps-data

joachim-gassen / expandar
open-science,R Package for Interactive Panel Data Exploration
User: joachim-gassen
accounting eda exploratory-data-analysis finance open-science package r replication shiny shiny-apps

mdeff / fma
open-science,FMA: A Dataset For Music Analysis
User: mdeff
Home Page: https://arxiv.org/abs/1612.01840
dataset music-analysis music-information-retrieval deep-learning open-data open-science reproducible-research

nasa / transform-to-open-science
open-science,Transformation to Open Science
Organization: nasa
open-data open-science open-code open-source cross-agency

neurodatawithoutborders / pynwb
open-science,A Python API for working with Neurodata stored in the NWB Format
Organization: neurodatawithoutborders
Home Page: https://pynwb.readthedocs.io
neuroscience python hdf hdf5 cross-platform open-data data-format open-source open-science reproducible-research

nsidc / earthaccess
open-science,Python Library for NASA Earthdata APIs
Organization: nsidc
Home Page: https://earthaccess.readthedocs.io/
nasa nasa-api openscience data access cmr cloud-computing gis open-science pangeo

obofoundry / obofoundry.github.io
open-science,Metadata and website for the Open Bio Ontologies Foundry Ontology Registry
Organization: obofoundry
Home Page: http://obofoundry.org
ontology-registry obo ontology semantic-web bioinformatics life-sciences metadata open-science open-source annotation

openchemistry / avogadroapp
open-science,Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.
Organization: openchemistry
Home Page: https://two.avogadro.cc/
avogadro openchemistry chemistry open-science visualization compchem desktop cross-platform qt5 hacktoberfest

openchemistry / avogadrolibs
open-science,Avogadro libraries provide 3D rendering, visualization, analysis and data processing useful in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.
Organization: openchemistry
Home Page: https://two.avogadro.cc/
chemistry scientific-computing open-source open-science opengl visualization desktop compchem avogadro computational-chemistry

openchemistry / tomviz
open-science,Cross platform, open source application for the processing, visualization, and analysis of 3D tomography data
Organization: openchemistry
Home Page: https://tomviz.org/
tomography visualization 3d-graphics open-source opengl scientific-visualization open-science python materials-science

opengeovis / pvgeo
open-science,🌍 Python package of VTK-based algorithms to analyze geoscientific data and models
Organization: opengeovis
Home Page: https://pvgeo.org
data-visualization geophysics geosciences paraview-plugin paraview visual-data-integration open-science python model-building vtk

openknowledgemaps / headstart
open-science,A framework for creating web-based knowledge maps
Organization: openknowledgemaps
Home Page: https://openknowledgemaps.org/
visualization open-science discovery-interface scholarly-communication

openlists / electrophysiologydata
open-science,A list of openly available datasets in (mostly human) electrophysiology.
Organization: openlists
data open-data open-science research electrophysiology electrophysiological-data eeg meg ecog lfp

openlists / electrophysiologysoftware
open-science,A list of openly available software tools for (mostly human) electrophysiology.
Organization: openlists
eeg meg electrophysiology software open-source open-science ecog lfp data-analysis list

openml / openml
open-science,Open Machine Learning
Organization: openml
Home Page: https://openml.org
machine-learning open-science science citizen-scientists collaboration opendata datasets hacktoberfest

openml / openml-r
open-science,R package to interface with OpenML
Organization: openml
Home Page: http://openml.github.io/openml-r/
openml cran r dataset database machine-learning reproducible-research open-data data-science datasets

opensnp / snpr
open-science,The sources of the openSNP website
Organization: opensnp
Home Page: http://opensnp.org
open-science rails opensnp bioinformatics

orfeotoolbox / otb
open-science,Github mirror of https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb
Organization: orfeotoolbox
Home Page: https://www.orfeo-toolbox.org/
otb orfeotoolbox cpp14 osgeo open-source image-processing remote-sensing open-science reproducible-research

osfclient / osfclient
open-science,A python library and command-line client for file storage on OSF
Organization: osfclient
Home Page: http://osfclient.readthedocs.io/en/stable/
science open-science data-management osf python

osgeo / grass
open-science,GRASS GIS - free and open-source geospatial processing engine
Organization: osgeo
Home Page: https://grass.osgeo.org
grass-gis geospatial geospatial-analysis raster vector timeseries-analysis earth-observation gis hacktoberfest open-science remote-sensing science spatial data-science machine-learning image-processing jupyter parallel-computing arrays python

oxinabox / datadeps.jl
open-science,reproducible data setup for reproducible science
User: oxinabox
data data-science open-science

pyopensci / python-package-guide
open-science,scientific Python package recommendations & guidance curated by pyOpenSci
Organization: pyopensci
Home Page: https://www.pyopensci.org/python-package-guide/
data-science open-science open-source python

pyvista / pyvista
open-science,3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)
Organization: pyvista
Home Page: https://docs.pyvista.org
vtk open-science python visualization 3d meshviewer scientific-visualization scientific-research plotting mesh

ropensci / osfr
open-science,R interface to the Open Science Framework (OSF)
Organization: ropensci
Home Page: https://docs.ropensci.org/osfr
osf open-science reproducible-research

simpeg / simpeg
open-science,Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications.
Organization: simpeg
Home Page: http://simpeg.xyz
python finite-volume geophysics inversion linear-algebra partial-differential-equations optimization geoscience modelling simulation electromagnetics magnetotellurics direct-current-resistivity induced-polarization richards-equation open-science modeling scientific-computing inverse-problems multiphysics

softwareunderground / awesome-open-geoscience
open-science,Curated from repositories that make our lives as geoscientists, hackers and data wranglers easier or just more awesome
Organization: softwareunderground
awesome-list geoscience open-source open-data awesome geophysics reservoir-modeling seismic geospatial subsurface geology open-science python cheatsheet geosciences geostatistics simulation geochemistry groundwater modflow

tdurieux / anonymous_github
open-science,Anonymous Github is a proxy server to support anonymous browsing of Github repositories for open-science code and data.
User: tdurieux
Home Page: https://anonymous.4open.science/
anonymous open-science double-blind double-anonymous peer-review

voice-lab / voicelab
open-science,Automated Reproducible Acoustical Analysis
Organization: voice-lab
Home Page: https://voice-lab.github.io/VoiceLab
acoustic-analysis voice-manipulation open-science speech-processing python python3 voice-analysis

zenodo / zenodo
open-science,Research. Shared.
Organization: zenodo
Home Page: https://zenodo.org
zenodo invenio python research-data-repository research-data-management flask digital-library open-science open-access scientific-publications library-management elasticsearch postgresql inveniosoftware