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inscape

INference of viral Spreaders through Computational Analysis of quasisPEcies (INSCAPE), a software for RNA virus spreader identification

iodide

Literate scientific computing and communication for the web

istar

istar is a software-as-a-service platform for bioinformatics and chemoinformatics.

jbwa

Java Bindings (JNI) for bwa

jocco

Jocco is Docco in Julia

juliaalignmenttoolbox

Parallel Smith-Waterman and Markov-Clustering tools

kaggle_westnilevirus

Winning solution for the Kaggle "West Nile Virus" competition (2015)

kajero

Interactive JavaScript notebooks with clever graphing

kemri-phylodynamics

Half day phylodynamics workshop at KEMRI

keras_tensorflow_demo

Demonstration of using Keras to run a simple deep feed forward artificial neural network using Tensorflow as backbone in R

klib

A standalone and lightweight C library

kmer-db

kneser-ney

Kneser-Ney implementation in Python

kseqpp

Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)

lassa-ebola-hla

HLA Genotype Sequencing of Hemorrhagic Fever Survivors using Illumina TruSight HLA v2 Sequencing Panel

lassa-isth-code

latexreadme

Parses Github README so it can "render" LaTeX equations.

letsencrypt.sh-rfc2136-hook

Let's Encrypt/Dehydrated dns-01 challenge hook using RFC2136 Dynamic DNS Updates.

libgaba

Adaptive semi-global banded alignment on string graphs

liblbfgs

libLBFGS: a library of Limited-memory Broyden-Fletcher-Goldfarb-Shanno (L-BFGS)

liblsd

A refactoring of least squares dating for use as a library

liblsoda

The LSODA algorithm for differential equations as a shared library

libnj

A C library for neighbour-joining and its variants

librmath-nim

The Rmath library from R

librmath.js

Javascript Pure Implementation of Statistical R "core" numerical libRmath.so

libtn93

C library to compute Tamura-Nei distances between (nucleotide) strings

lil_aye_deez_2k19

GE585 Spring 2019: CDC Aedes mosquito forecast competition

limis

Langevin Incremental Mixture Importance Sampling

linalg-asm

Linear algebra using asm.js

linear-algebra

linear-algebra.js bundled up