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Simon Frost's Projects

quickprobs icon quickprobs

QuickProbs algorithm for the multiple sequence alignment problem

r-index icon r-index

An optimal space run-length Burrows-Wheeler transform full-text index

radixsa64 icon radixsa64

Suffix sorting (suffix array) or L-mer Sorting Algorithm

rdptools icon rdptools

Collection of commonly used RDP Tools for easy building

rds_tools icon rds_tools

Respondent Driven Sampling (RDS), tools for RDS data processing

rdsvis icon rdsvis

RDSvis - a web application to visualise RDS data

react-plotlyjs icon react-plotlyjs

ReactJS / PlotlyJS integration. Draw plotly.js graphs in your react app.

readfq icon readfq

Fast multi-line FASTA/Q reader in several programming languages

recurrentjs icon recurrentjs

Deep Recurrent Neural Networks and LSTMs in Javascript. More generally also arbitrary expression graphs with automatic differentiation.

refseq_masher icon refseq_masher

Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database

regexgenerator icon regexgenerator

This project contains the source code of a tool for generating regular expressions for text extraction: 1. automatically, 2. based only on examples of the desired behavior, 3. without any external hint about how the target regex should look like

rise icon rise

RISE: "Live" Reveal.js Jupyter/IPython Slideshow Extension

roguenarok icon roguenarok

A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf stability index and taxonomic instability index

root-sim icon root-sim

The ROme OpTimistic Simulator: a fast distributed multithreaded Parallel Discrete Event Simulator

rosalind icon rosalind

A repository for my solutions to problems from - http://www.rosalind.info

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