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Simon Frost's Projects

bwa-pssm icon bwa-pssm

A burrows-wheeler transform-based probabilistic short read mapper.

c icon c

Compile and execute C "scripts" in one go!

c-minhash icon c-minhash

Simple and fast MinHash implementation in C with Python wrapper

celerite icon celerite

Scalable 1D Gaussian Processes in C++, Python, and Julia

celerite.jl icon celerite.jl

Implementation of semi-separable Cholesky decomposition in Julia

cepi icon cepi

Simula-style stochastic simulations in C

char-rnn-tensorflow icon char-rnn-tensorflow

Multi-layer Recurrent Neural Networks (LSTM, RNN) for character-level language models in Python using Tensorflow

cnn icon cnn

Using a Convolutional Neural Network for classifying DNA Sequences

cnn-1 icon cnn-1

Development code for CNN audio processing

coalescenator icon coalescenator

Software for population genetic inference from serially sampled genome sequencing data

codonalign icon codonalign

Standalone version of Codon Alignment from Los Alamos National Laboratory.

coi_ncbi_2018 icon coi_ncbi_2018

This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904

conan-cmsis icon conan-cmsis

A Conan package for the ARM CMSIS DSP library, which can be compiled for x86 as well as for ARM architectures.

covid icon covid

Modeling The Covid-19 Outbreak with Agent Based Models

covid19 icon covid19

JSON time-series of coronavirus cases (confirmed, deaths and recovered) per country - updated daily

crepe icon crepe

Character-level Convolutional Networks for Text Classification

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