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varscan

Variant calling and somatic mutation/CNV detection for next-generation sequencing data

varsim

VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications

vbcca

Variational Bayesian Canonical Correlation Analysis

vcf-annotate-polyphen

A tool to annotate human VCF files with PolyPhen2 effect measures

vcf2maf

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

vcf2maf-1

Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)

vcftools

A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

vcfutil

VCF file utility program

vdjpuzzle

T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data

vegan

R package for community ecologists

vennerable

Vennerable provides Venn diagrams in R. It displays Venn and Euler diagrams for up to 9 different sets and using a variety of geometries. It allows the display of area-weighted Venn diagrams and allows fine graphical control over the result.

verifybamid

vg

tools for working with variation graphs

virome_cross_assembly

Coming soon.

visjs2jupyter

visJS2jupyter is a tool to bring the interactivity of networks created with vis.js into jupyter notebook cells

visualstudio

GitHub Extension for Visual Studio

vsearch

Versatile open-source tool for metagenomics

vtk-modularization

Scripts for VTK modularization

wavelet

Wavelet - A library for online estimation of the Continuous Wavelet Transform

wavelet-1

Wavelet analysis and synthesis

wdl

Workflow Description Language - Specification and Implementations

wgs-hgt

Workflow for detecting genome-wide horizontal gene transfers

wgs-structvar

Whole Genome Sequenceing Structural Variation Pipelines

whoz

Simple annotation database

workshopbioc2016

xcode

Development repository for Chef Cookbook for Apple XCode

yarn

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/yarn.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=yarn.

zifa

Zero-inflated dimensionality reduction algorithm for single-cell data

zika

Data repository of publicly available Zika data