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klib

A standalone and lightweight C library

knitr

A general-purpose tool for dynamic report generation in R

knitr-examples

a collection of knitr examples

koeken

A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.

labs

Rmd source files for the HarvardX series PH525x

langmead-lab

Publicly-visible Langmead Lab resources

lasso-elasticnet-toolkit

lb-seq

Liquid Biopsy Sequencing analysis tools for cell free DNA sequencing

lda-effectsize

a combination of linear discriminant analysis and effect size

ldhat

Estimate recombination rates from population genetic data

ldhot

Detect recombination hotspots using population genetic data.

ldsc

LD Score Regression (LDSC)

leanback

Interactive javascript plots of biological data using D3.js (moved to bit.ly/rclickme as longitudinal_heatmap)

learnbioconductor

Training material for introductory R / Bioconductor courses

lefse

:exclamation: This is a read-only mirror of the CRAN R package repository. lefse — Phylogenetic and Functional Analyses for Ecology

libcsptr

Smart pointers for the (GNU) C programming language

libplinkio

A small C and Python library for reading PLINK genotype files.

libripoff

simple library to detect plagiarism in source code

liger

Lightweight Iterative Gene set Enrichment in R

lightgbm

A fast, distributed, high performance gradient boosting (GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks. It is under the umbrella of the DMTK(http://github.com/microsoft/dmtk) project of Microsoft.

limix

limix-tutorials

Limix tutorials and demos

limma

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/limma.html Contributions: http://bioinf.wehi.edu.au/limma. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=limma.

linear-regression-in-tensorflow

lintr

Static Code Analysis for R

lme4

Mixed-effects models in R using S4 classes and methods with RcppEigen

load

need load to MySQL database for gene search function etc.

long_range_ld

Find Long Range LD using TAPER algorithm

loo

loo R package for approximate leave-one-out cross-validation and WAIC

lowrankmatrixdecompositioncodes

RSVDPACK: Implementations of fast algorithms for computing the low rank SVD, interpolative and CUR decompositions of a matrix, using randomized sampling. Includes codes for single core (using GNU GSL), multi-core (using Intel MKL) and GPU (using NVIDIA CUDA/CULA) architectures.