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presentations

DukeLeto's presentations

prettyplotlib

Painlessly create beautiful matplotlib plots.

prettytensor

Pretty Tensor: Fluent Networks in TensorFlow

pride-inspector

PRIDE Inspector is a Java desktop application to visualise and Quality Assessment on Mass Spectrometry data and Proteomics

primer3-py

Simple oligo analysis and primer design

primerdesign

prob_tensor_decomp

Probabilistic tensor decomposition (CP decomposition, Tucker decomposition), applied in gene expression and cognitive neuroscience.

probabilistic2020

Simulates somatic mutations, and calls statistically significant oncogenes and tumor suppressor genes based on a randomization-based test

probabilisticgraphicalmodel

Probabilistic Graphical Model Course in Coursera

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

protein-degradation-kinetics

Kinetic Analysis of Protein Stability Reveals Age-Dependent Degradation, Cell (2016)

protein-expression-noise

protein_complex_maps_public

Public repository for building and analyzing protein complex maps

proteomicsbioc2016workshop

R/Bioconductor tools for mass spectrometry-based proteomics

protoboard

A dashboard built with Tornado and Protovis

protocol

Evaluation protocol for computational methods predicting cancer driver genes

psmc

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

psoriasis

Drug repositioning for psoriasis based on cogena

puppet-beast

Install BEAST (Bayesian Evolutionary Analysis by Sampling Trees) via Boxen / Puppet

py-merp

A Python Package for Mendelian Randomization Analysis

pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

pycogent

PyCogent: Official repository for software and unit tests

pygeno

pyGeno: A Python package for precision medicine and proteogenomics

pyhbase

A Python client for the HBase Avro interface

pylearn2

A Machine Learning library based on Theano

pypath

python module for signaling pathways analysis accompanying OmniPath

pyrcca

Regularized kernel canonical correlation analysis in Python

pystan

PyStan, the Python interface to Stan

python-docs-samples

Code samples used on cloud.google.com

python-ngs