alenzhao Goto Github PK

aws-eb-python-dockerfiles

Official Elastic Beanstalk repository for Python docker files.

aws-iot-device-sdk-python

SDK for connecting to AWS IoT from a device using Python.

azimuth

Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency

backports

Reimplementations of Functions Introduced Since R-3.0.0

badger

Bayesian approach for detecting copy number alterations from single cell RNA-seq data

bam-readcount

count DNA sequence reads in BAM files

bam2ec

Convert BAM and SAM files to binary format with Equivalence Classes

bam2x

extract information from bam (sequence alignment) files and generate tables for further analysis.

bamdessicate

Reduce the size of BAM files by stripping out read and quality information, while preserving mapping data.

bamstats

A command line tool to compute mapping statistics from a BAM file

bamtools

C++ API & command-line toolkit for working with BAM data

bash

just a repository for my Bash scripts - mostly really standard genomics stuff

basics

BASiCS: Bayesian Analysis of Single-Cell Sequencing Data

batcheffectremoval

batcheffects

Algae metabolomics data analysis

batchqc

Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.

batchtools

Tools for computation on batch systems

bayesian_network

A Bayesian Method for the Induction of Probalistic Networks from Data

bayesnetlearning_generegulation

Bayesian network learning of gene regulatory rules

bbs

bbs-provision-cookbook

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bcbio-nextgen-vm

Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines

bcbio.variation

Toolkit to analyze genomic variation data, built on the GATK with Clojure

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

bcgwas

Website for the breast cancer GWAS project with MN and FB.

beacon-go

AppEngine implementation of the Beacon API from the Global Alliance for Genomics and Health written in Go.

beast-mcmc

Bayesian Evolutionary Analysis Sampling Trees

beast_sandbox

Fork of BEAST, a program for Bayesian analysis via MCMC of Evolution & Phylogenetics using Molecular Sequences