Comments (2)
ziyewang
commented on July 30, 2024
Hi,
Is the sequencing data pair-end, single-end or interleaved? If it's pair-end, the original code can be used directly by just modifying the input options. If not, I'll update the code to support compressed files.
"Options:
-f Forward read suffix for paired reads (default="_1.fastq")
-r Reverse read suffix for paired reads (default="_2.fastq")"
Best,
Ziye
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Sanrrone
commented on July 30, 2024
Hi,
They are single end compressed. But I could do a workaround by using the same command inside the script (bwa + samtools).
thank you!
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