Comments (4)
请问还有问题吗?如果仍需要解决的话,能否提供一下完整的报错信息?
谢谢
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谢谢回复,请问有新的更新吗?
软件安装参照您提供的conda 流程,运行命令 conda activate /home/chenkai/miniconda3/envs/metabinner_env/
run_metabinner.sh -a final_contigs_f1k.fa -d coverage_profile_f1k.tsv -t 40 -k kmer_4_f1000.csv -p /home/chenkai/miniconda3/envs/metabinner_env/bin/ -o metabinner.test
完整报错信息如下:
Traceback (most recent call last):
File "./component_binning.py", line 406, in
handler = logging.FileHandler(args.log)
File "/home/chenkai/miniconda3/envs/metabinner_env/lib/python3.7/logging/init.py", line 1087, in init
StreamHandler.init(self, self._open())
File "/home/chenkai/miniconda3/envs/metabinner_env/lib/python3.7/logging/init.py", line 1116, in _open
return open(self.baseFilename, self.mode, encoding=self.encoding)
FileNotFoundError: [Errno 2] No such file or directory: '/home/chenkai/miniconda3/envs/metabinner_env/bin/scripts/metabinner.test/metabinner_res/result.log'
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你好,应该是因为代码会改变当前路径,所以请给输出-a -d -k -o输入绝对路径,例如 /home/chenkai/metabinner.test。
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添加绝对路径后成功运行,再次感谢!
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Related Issues (20)
- something wrong in the script - Filter_tooshort.py HOT 2
- Two bugs to fix for preparing data HOT 2
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- Something went wrong with running split_hhbins.py. HOT 3
- Work in eukaryotic organisms? HOT 1
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- A bug in gen_kmer.py HOT 3
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