Topic: variant-effect-prediction Goto Github
Some thing interesting about variant-effect-prediction
Some thing interesting about variant-effect-prediction
variant-effect-prediction,Preliminary analysis of a combined DMS dataset, including clustering and VEP benchmark
User: allydunham
variant-effect-prediction,Fully convolutional deep learning variant effect predictor architecture
User: allydunham
Home Page: https://sequence-unet.readthedocs.io
variant-effect-prediction,Deep learning model for non-coding regulatory variants
User: anilprakash94
variant-effect-prediction,Pipeline for variant annotation using Variant Effect Predictor (VEP)
Organization: cerc-genomic-medicine
variant-effect-prediction,Deep learning framework to predict functional effects of missense variants in human
Organization: deeprank
variant-effect-prediction,Implementation of evolutionary model of variant effect (EVE), a deep generative model of evolutionary data, in PyTorch.
User: dohlee
variant-effect-prediction,Implementation of SpliceAI, Illumina's deep neural network to predict variant effects on splicing, in PyTorch.
User: dohlee
variant-effect-prediction,Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objective function.
Organization: elaspic
Home Page: https://gitlab.com/elaspic/elaspic2
variant-effect-prediction,We present Envision, an accurate predictor of protein variant molecular effect, trained using large-scale experimental mutagenesis data. All data and software in this study are freely available. The training data set and all code used to train the models and generate the figures presented in this manuscript are available here. Envision predictions, along with feature annotations, are available at https://envision.gs.washington.edu/.
Organization: fowlerlab
variant-effect-prediction,Tissue-specific variant effect predictions on splicing
Organization: gagneurlab
variant-effect-prediction,Experimenting with protein language model predictions
User: jhrcook
variant-effect-prediction,CADD-SV – a framework to score the effect of structural variants
Organization: kircherlab
Home Page: https://cadd-sv.bihealth.org
variant-effect-prediction,interactive variant tables for easy filtering
User: kopalgarg
variant-effect-prediction,A Haskell script that performs basic parsing on the default output of ensembl-vep and variant-calling format (vcf) files.
User: matthew-mosior
variant-effect-prediction,Clinical Whole Genome and Exome Sequencing Pipeline
Organization: openomics
Home Page: https://openomics.github.io/genome-seek/
variant-effect-prediction,Genomic Pre-trained Network
Organization: songlab-cal
Home Page: https://doi.org/10.1073/pnas.2311219120
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