Topic: peptide-identification Goto Github
Some thing interesting about peptide-identification
Some thing interesting about peptide-identification
peptide-identification,Toolset to make proteomics data analysis less tedious.
User: arsh25
peptide-identification,PredGenesGetPepts is an easy-to-use, beginner-friendly pipeline to call genes from fasta files, retrieve peptides and blasting them against a given protein database
User: astrabert
peptide-identification,Predicts anticancer peptides using random forests trained on the n-gram encoded peptides. The implemented algorithm can be accessed from both the command line and shiny-based GUI.
Organization: biogenies
Home Page: https://biogenies.github.io/CancerGram/
peptide-identification,Tools for filtering k-mer data
Organization: biogenies
Home Page: http://biogenies.info/kmerFilters/
peptide-identification,Collects software dedicated to predicting specific properties of peptides
Organization: biogenies
Home Page: https://biogenies.info/peptide-prediction-list/
peptide-identification,DeepRescore: rescore PSMs leveraging deep learning-derived peptide features
Organization: bzhanglab
peptide-identification,PepQuery: a targeted peptide search engine
Organization: bzhanglab
Home Page: http://pepquery.org
peptide-identification,MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
Organization: compomics
Home Page: https://ms2pip.readthedocs.io
peptide-identification,Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
Organization: compomics
Home Page: https://ms2rescore.readthedocs.io
peptide-identification,Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
Organization: compomics
Home Page: https://psm-utils.readthedocs.io
peptide-identification,Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
User: cpanse
Home Page: https://CRAN.R-project.org/package=protViz
peptide-identification,Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
User: denisbeslic
peptide-identification,This repository contains scripts used to clean genome sequencing data; such that it passes quality control for analysis. Script(s) include: Open Reading Frame. Code is written in Python 3. Spring 2021
User: dusteenie
peptide-identification,This project has been deprecated. Please use ECL2 (https://github.com/fcyu/ECL2).
User: fcyu
peptide-identification,A fast and exhaustive cross-linked peptides identification tool.
User: fcyu
peptide-identification,A GUI to view the annotated spectra identified by ECL2
User: fcyu
peptide-identification,PTM-Invariant Peptide Identification. An open search tool.
User: fcyu
peptide-identification,Proof-of-concept implementation of a search engine that uses sparse matrix multiplication to identify the best peptide candidates for a given mass spectrum.
Organization: hgb-bin-proteomics
Home Page: https://hgb-bin-proteomics.github.io/CandidateSearch
peptide-identification,Searching for peptide candidates using sparse matrix + matrix/vector multiplication.
Organization: hgb-bin-proteomics
Home Page: https://hgb-bin-proteomics.github.io/CandidateVectorSearch
peptide-identification,Template repository for custom backends in MS Annika.
Organization: hgb-bin-proteomics
Home Page: https://github.com/hgb-bin-proteomics/CandidateVectorSearch
peptide-identification,Highly customizable research-oriented peptide search engine
Organization: lemieux-lab
peptide-identification,Labs and project archive for DD2404 Applied Bioinformatics
User: lindsayxx
peptide-identification,modular & open DIA search
Organization: mannlabs
Home Page: https://alphadia.readthedocs.io
peptide-identification,A bioinformatics project to predict antimicrobial peptides using Pfeature, CD-HIT, and Random Forest Generation
User: mellieho9
peptide-identification,Protein Identification with Deep Learning
User: nh2tran
peptide-identification,A tool for mass spectrometry data analysis.
User: novak-jiri
Home Page: https://ms.biomed.cas.cz/cyclobranch/
peptide-identification,
Organization: pfindstudio
peptide-identification,A spectacularly simple package for working with peptide sequences.
User: pgarrett-scripps
Home Page: https://peptacular.readthedocs.io/en/latest/index.html
peptide-identification,A peptide fragment ion calculator made with streamlit
User: pgarrett-scripps
Home Page: https://peptidefragmenter.streamlit.app/
peptide-identification,Protein Cleaver is a versatile tool for protein analysis and digestion.
User: pgarrett-scripps
Home Page: https://proteincleaver.streamlit.app/
peptide-identification,Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
Organization: ursgal
peptide-identification,Predict and match digested peptides sequences, their mass m/z and MS/MS spectra with chemical derivatization or post-translational modification.
User: yufongpeng
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