hgb-bin-proteomics Goto Github PK
Name: FHOOE Hagenberg Bioinformatics/Proteomics Research Group
Type: Organization
Bio: Bioinformatics/Proteomics Research Group of the FH OOE Hagenberg
Location: Austria
Name: FHOOE Hagenberg Bioinformatics/Proteomics Research Group
Type: Organization
Bio: Bioinformatics/Proteomics Research Group of the FH OOE Hagenberg
Location: Austria
GitHub Profile
Proof-of-concept implementation of a search engine that uses sparse matrix multiplication to identify the best peptide candidates for a given mass spectrum.
Searching for peptide candidates using sparse matrix + matrix/vector multiplication.
Template repository for custom backends in MS Annika.
Helper scripts for crosslink analysis.
A template repository for building and testing .NET commandline applications.
Extensions for better usability of the cross-linking tool MaXLinker.
MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of MS2-cleavable crosslinkers from MS2 and MS3 spectra.
A script to merge and optionally validate several MS Annika search results.
Calculates Intensities of Cross-linked Peptides from MS Annika CSMs.
Export MS Annika crosslink results to different formats.
List of all available extensions for our cross-linking search engine MS Annika.
A script and functions to group and validate MS Annika results.
Results and Evaluation of the MS3 Search Algorithm of MS Annika.
Generate a spectral library for Spectronaut from MS Annika results.
Peptide Matching Game
A simple python script to fix scan numbers in result files generated by Proteome Discoverer.
A template repository for linting, testing, GUI building and dockerizing python scripts.
Extensions to use the cross-linking tool Scout with other software.
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