Topic: contamination-detection Goto Github
Some thing interesting about contamination-detection
Some thing interesting about contamination-detection
contamination-detection,Generate Coverage, Quality and Contamination metrics for Sequence data.
User: alipirani88
Home Page: https://alipirani88.github.io/QC-d/
contamination-detection,DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS data analysis, while providing a complete, reliable, and automatic pipeline. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2684-x
User: amarinderthind
Home Page: http://www-labgtp.na.icar.cnr.it/decontaminer/
contamination-detection,In this repository I backup the pipelines I write for the project I am involved
User: auroramaurizio
contamination-detection,luftdaten script for raspberry with enviro+
User: jfisbein
contamination-detection,Outlier Detection Thresholding
User: kulikdm
Home Page: https://pythresh.readthedocs.io/en/latest/?badge=latest
contamination-detection,CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
Organization: metagenopolis
contamination-detection,Python package to calculate various sample contamination metrics.
Organization: msk-access
Home Page: https://msk-access.gitbook.io/biometrics/
contamination-detection,A simple pipeline for bacterial assembly and quality control
Organization: phac-nml
Home Page: https://phac-nml.github.io/mikrokondo/
contamination-detection,Fast microbial species identification (16S rRNA gene-based approach) and contamination check using whole genome assemblies
User: raymondkiu
contamination-detection,GroundWater Spatiotemporal Data Analysis Tool (GWSDAT) R-Shiny implementation.
User: waynegitshell
Home Page: https://stats-glasgow.shinyapps.io/GWSDAT
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