Topic: basecalling Goto Github
Some thing interesting about basecalling
Some thing interesting about basecalling
basecalling,Novel basecaller, jointly processing raw and event data from ONT nanopore, basec on encoder-decoder + attention architecture
User: adamnapieralski
basecalling,Rapid comprehensive adaptive nanopore-sequencing of CNS tumours set-up and analysis pipeline
User: areebapatel
basecalling,The first work to provide a comprehensive survey of a prominent set of algorithmic improvement and hardware acceleration efforts for the entire genome analysis pipeline used for the three most prominent sequencing data, short reads (Illumina), ultra-long reads (ONT), and accurate long reads (HiFi). Described in arXiv (2022) by Alser et al. https://arxiv.org/abs/2205.07957
Organization: cmu-safari
basecalling,Nanopore direct RNA basecaller
Organization: comprna
basecalling,Quickstart to Bioinformatics & Biomedical AI.
User: guangzhaocs
basecalling,My PhD thesis
User: mbhall88
Home Page: https://doi.org/10.17863/CAM.81350
basecalling,A PyTorch Basecaller for Oxford Nanopore Reads
Organization: nanoporetech
Home Page: https://nanoporetech.com/
basecalling,Oxford Nanopore's Basecaller
Organization: nanoporetech
Home Page: https://nanoporetech.com/
basecalling, Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.
Organization: nanoporetech
basecalling,Python client library for Guppy
Organization: nanoporetech
Home Page: https://nanoporetech.com/
basecalling,Methylation/modified base calling separated from basecalling.
Organization: nanoporetech
Home Page: https://nanoporetech.com
basecalling,Research release basecalling models and configurations
Organization: nanoporetech
Home Page: https://nanoporetech.com/
basecalling,modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
Organization: novoalab
Home Page: https://modphred.readthedocs.io
basecalling,SARS-CoV-2 workflow for nanopore sequence data
User: replikation
Home Page: https://case-group.github.io/
basecalling,Impact of lossy compression of nanopore raw signal data on basecall and consensus accuracy
User: shubhamchandak94
basecalling,A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
User: sirselim
Home Page: https://hackmd.io/@Miles/S12SKP115
basecalling,Scripts for Basecalling on GridION Sequenicng machines from Oxford Nanopore
User: tjsanko
basecalling,snakemake workflow for basecalling and demultiplexing of ONT sequencing data
User: vibaotram
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