Topic: ancient-dna Goto Github
Some thing interesting about ancient-dna
Some thing interesting about ancient-dna
ancient-dna,Program to generate RAxML sliding window trees
User: achimklittich
ancient-dna,A beginner's guide to aDNA analysis, including scripts to streamline the process.
User: albanieto
ancient-dna,Phylogenetic intersection analysis (PIA) from the Allaby lab, University of Warwick: doi.org/10.3389/fevo.2020.00084
User: allaby-lab
ancient-dna,Additional tools for manipulating PIA output.
User: allaby-lab
ancient-dna,
User: benjaminpeter
ancient-dna,Repository of code for the paper "The evolutionary history of Neandertal and Denisovan Y chromosomes" by Petr et al.
User: bodkan
ancient-dna,🗑️🦷 decOM 🦷🗑️
User: camiladuitama
ancient-dna,A free and easy-to-use pipeline to analyse data from ancient NCR-mtDNA sequences obtained by amplicon-based NGS methods
User: danielrca
ancient-dna,Small program to mask positions that are likely to result in PMD artifact from a BAM file using a predefined SNP catalog
User: etkayapar
ancient-dna,From .bam to .csv with annotated Y-chromosome variants
User: fj-blanco
ancient-dna,A realistic-ish aDNA simulator
User: jazpy
ancient-dna,A small R notebook describing how plot common (aDNA) population genetics PCAs using R and the tidyverse.
User: jfy133
ancient-dna,An ancient DNA genetic relatedness estimation software relying on pedigree simulations
User: maellefeuvre
ancient-dna,grups.plots is a companion R package to grups-rs, providing with a Shiny dashboard, harboring multiple interactive visualizations, utilities and summary statistics to analyse its results
User: maellefeuvre
ancient-dna,Damage parameter estimation for ancient DNA
User: maxibor
ancient-dna,🧹 aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets
User: md5sam
ancient-dna,A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.
Organization: moiexpositoalonsolab
Home Page: http://grene-net.org
ancient-dna,Statement of the Ethics Discussion Group at the Department of Archaeogenetics (MPI-SHH/MPI-EVA)
Organization: mpi-eva-archaeogenetics
Home Page: https://www.eva.mpg.de/archaeogenetics/ethics.html
ancient-dna,A pipeline for the analysis of sedimentary ancient mtDNA
Organization: mpieva
Home Page: https://quicksand.readthedocs.io/en/v2.1/
ancient-dna,R Package - Spatiotemporal Ancestry Interpolation and Search
User: nevrome
Home Page: https://nevrome.de/mobest
ancient-dna,Research compendium for ‘Estimating human mobility in Holocene Western Eurasia with large-scale ancient genomic data’; If you want to perform spatio-temporal similary search with the mobest R package as presented in the paper, then you can directly check the documentation here: https://nevrome.de/mobest
User: nevrome
ancient-dna,Experiments with the genotype data generators in xerxes
User: nevrome
ancient-dna,Coprolite host Identification pipeline
Organization: nf-core
Home Page: https://nf-co.re/coproid
ancient-dna,Repository for data, code & figures related to the publication: "Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic"
Organization: paleobiotechnology
Home Page: https://doi.org/10.1126/science.adf5300
ancient-dna,The Poseidon AADR Archive (PAA)
Organization: poseidon-framework
Home Page: https://www.poseidon-adna.org/#/archive_overview
ancient-dna,The Poseidon Community Archive (PCA)
Organization: poseidon-framework
Home Page: https://www.poseidon-adna.org/#/archive_overview
ancient-dna,R Package - Handling .janno files in R
Organization: poseidon-framework
Home Page: https://poseidon-framework.github.io/#/janno_r_package
ancient-dna,The Poseidon Minotaur Archive (PMA)
Organization: poseidon-framework
Home Page: https://www.poseidon-adna.org/#/archive_overview
ancient-dna,Main landing page for getting information about the Poseidon project
Organization: poseidon-framework
Home Page: https://www.poseidon-adna.org
ancient-dna,A toolset to work with modular genotype databases in the Poseidon format
Organization: poseidon-framework
Home Page: https://poseidon-framework.github.io/#/trident
ancient-dna,An archaeogenetic genotype data organisation file format
Organization: poseidon-framework
ancient-dna,A CLI tool to run SQL queries on Poseidon .janno files
Organization: poseidon-framework
Home Page: https://poseidon-framework.github.io/#/qjanno
ancient-dna,Backend for all sidora applications
Organization: sidora-tools
ancient-dna,AncientMetagenomeDir Toolkit
Organization: spaam-community
Home Page: https://amdirt.readthedocs.io
ancient-dna,Website and data repository a directory of ancient metagenomic labs
Organization: spaam-community
Home Page: http://www.spaam-community.org/ancient-metagenomics-labs/
ancient-dna,Repository containing lists of all published ancient metagenomic (and related) samples and libraries
Organization: spaam-community
Home Page: http://www.spaam-community.org/AncientMetagenomeDir/
ancient-dna,Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.
User: sunyatin
ancient-dna,Uncertainty estimation toolkit for dimensionality reduction on population genetics data.
User: tschuelia
Home Page: https://pandorageno.readthedocs.io
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