Tim's Projects
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
A matplotlib GUI to run the Segment Anything Model
Segment anything UI for annotations
Matlab GUI pipeline application for quantitative susceptibility mapping (QSM)
Python package for signal processing, with emphasis on iterative methods
SigPy for MRI Tutorial
Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.
NumPy, SciPy, MRI and Music | Presented at ISMRM 2021 Sunrise Educational Session
T2 Shuffling recon in Python
Demonstration code for the MRM manuscript, "T2 Shuffling: Sharp, Multi-Contrast, Volumetric Fast Spin-Echo Imaging"
Config files for my GitHub profile.
Trajectory Optimized Nufft
python file reader/writer for Siemens MRI raw data + compression utility
copy of Stanford's wavelab matlab library for dependent projects www-stat.stanford.edu/~wavelab/