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mousemorph

Tools for MRI mouse brain morphometry

mrf

An end to end, vendor neutral MRF package

mri-sim-py

Magnetic Resonance Imaging (MRI) Simulation Code in Python

mriresearchtools.jl

Specialized tools for MRI

narrator

David Attenborough narrates your life

neurocontainers

The containers can be used in combination with our transparent singularity or neurocommand tool, that wrap the executables inside a container to make them easily available for pipelines

neurodesktop

The plug-and-play, browser-accessible, containerised data analysis environment.

niftyseg

nmrglue

A module for working with NMR data in Python

nn-svg

Publication-ready NN-architecture schematics.

numerical-tours

Numerical Tours of Signal Processing

primal-dual-toolbox

GPU-based Total (Generalized) Variation implementation for various applications, with Python and Matlab wrappers.

pulseq

Open source framework for pulse sequences

pulseq_tutorials

This is a collection of various Pulseq tutorials, which is supposed to grow in future

pyenv

Simple Python version management

pypulseq

Pulseq in Python

qmrlab

Quantitative MRI Made Easy with qMRLab: MRI software for data Simulation, analysis and visualization

qsm

Hongfu Sun's MATLAB codes for QSM reconstruction pipeline.

quit

A set of tools for processing Quantitative MR Images

ratlesnetv2

RatLesNetv2 is convolutional neural network for rodent brain lesion segmentation.

rodentmriskullstripping

U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu

rodentmriskullstripping3d

segment-anything

The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

segment-anything-gui

A matplotlib GUI to run the Segment Anything Model

segment-anything-ui

Segment anything UI for annotations

sepia

Matlab GUI pipeline application for quantitative susceptibility mapping (QSM)

sigpy

Python package for signal processing, with emphasis on iterative methods

sigpy-mri-tutorial

SigPy for MRI Tutorial

singularity

Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.

sunrise

NumPy, SciPy, MRI and Music | Presented at ISMRM 2021 Sunrise Educational Session