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  • šŸ‘‹ Hi, Iā€™m @timwahoo.
  • šŸ‘€ Iā€™m interested in MRI
  • šŸŒ± Iā€™m currently learning Linear Algebra
  • šŸ’žļø Iā€™m looking to collaborate on open-source imaging

This github serves as my sandbox for anything and everything that I find interesting for my applications of MRI. It's a curation of forks that range from the basics to advance MRI topics.

Tim's Projects

mrf icon mrf

An end to end, vendor neutral MRF package

mri-sim-py icon mri-sim-py

Magnetic Resonance Imaging (MRI) Simulation Code in Python

mrilab icon mrilab

A Numerical Magnetic Resonance Imaging (MRI) Simulation Platform

mrsignalsseqs icon mrsignalsseqs

Stanford University Rad229 Class Code: MRI Signals and Sequences

neurocontainers icon neurocontainers

The containers can be used in combination with our transparent singularity or neurocommand tool, that wrap the executables inside a container to make them easily available for pipelines

neurodesktop icon neurodesktop

The plug-and-play, browser-accessible, containerised data analysis environment.

nighres icon nighres

Processing tools for high-resolution neuroimaging

nmrglue icon nmrglue

A module for working with NMR data in Python

nn-svg icon nn-svg

Publication-ready NN-architecture schematics.

nordic_raw icon nordic_raw

Matlab code for performing image reconstruction in MRI and performing the NORDIC denoising

openpilot icon openpilot

openpilot is an open source driver assistance system. openpilot performs the functions of Automated Lane Centering and Adaptive Cruise Control for 250+ supported car makes and models.

primal-dual-toolbox icon primal-dual-toolbox

GPU-based Total (Generalized) Variation implementation for various applications, with Python and Matlab wrappers.

pulseq icon pulseq

Open source framework for pulse sequences

pulseq_tutorials icon pulseq_tutorials

This is a collection of various Pulseq tutorials, which is supposed to grow in future

pyenv icon pyenv

Simple Python version management

qmrlab icon qmrlab

Quantitative MRI Made Easy with qMRLab: MRI software for data Simulation, analysis and visualization

qsm icon qsm

Hongfu Sun's MATLAB codes for QSM reconstruction pipeline.

quit icon quit

A set of tools for processing Quantitative MR Images

ratlesnetv2 icon ratlesnetv2

RatLesNetv2 is convolutional neural network for rodent brain lesion segmentation.

recon icon recon

Primal-Dual Solver for Inverse Problems

reproduce-l-s-dynamic-mri icon reproduce-l-s-dynamic-mri

Matlab code for reproducing 2019 IEEE Tr. Comp. Im. paper "Efficient Dynamic Parallel MRI Reconstruction for the Low-Rank Plus Sparse Model" by Claire Lin

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