Light

jtleek / genstats Goto Github PK

View Code? Open in Web Editor NEW

145.0 26.0 215.0 15.5 MB

Statistics course for JHU Genomic Data Science Sequence

License: Other

R 0.24% HTML 99.71% Rebol 0.04%

genstats's Introduction

Statistics for Genomic Data Science R package

This is the R package containing the code and lecture materials for the class Statistics for Genomic Data Science. You can get all of the code used in the class by installing the R package:

source("http://bioconductor.org/biocLite.R")
biocLite("devtools")    # only if devtools not yet installed
biocLite("jtleek/genstats",ref="gh-pages")

You can see the list of lecture notes and open them using the vignette command:

vignette(package="genstats")
vignette("01_13_clustering")

For more information check out:

Lecture Notes: http://jtleek.com/genstats_site
Course: Statistics for Genomic Data Science
Specialization: Genomic Data Science Specialization

genstats's People

Contributors

Stargazers

Watchers

Forkers

xiang-tischhauser manojcyient juliabromberek michwoz huangyuan2000 chadchougithub jdrnevich barisal2008 geantonicelli vinace bkiranmayee liz-fernandez deano1351 lynch-j xliu0528 akinwamb snehajeevan saskiaselzam zzhang6 fredus14 jjcfromshantou kristikrebs akknight pc2001 jianbing-zhang misato2501 eslamnader loganschneider hoagiang thezuda zli00 pclo tarah28 twohlever acz4nr sivanandan kevinrue amews bw0 snuorch kclemens67 krithika17 jaynal83 murattunaboylu amustaf5 akp-ut martimij sthy14 hsuanu jedau chaokang2012 jmtorres138 zchen2015 zzygyx9119 adrianozallo cpsosa jasonium ywsheng227 spartanzhao wenliangz danielaags shogit dhelix maidermunoz alenazhang tammachari lg72cu mdeea milanresko kranthisai mwerner123 panaceagenomics greener98103 fumikos friveramariani joaopitacosta sam-shariati alberttorello migeru ducdh1210 zhaiqt radovankavicky cooleel totakearoadlesstravelled stephanekazmierczak alexindata miaomiaocpu shubham1637 luna5124 jfqg1924 antjemaertin u4ickleviathan algunion adomingues chenglilab tintingli skerker jelena11 rsankowski reyt1

genstats's Issues

RSkittleBrewer not available for R 3.2.2

Unable to successfully run biocLite("jtleek/genstats",ref="gh-pages") in R version 3.2.2.

> biocLite("jtleek/genstats",ref="gh-pages")
BioC_mirror: http://bioconductor.org
Using Bioconductor version 3.1 (BiocInstaller 1.18.4), R version 3.2.2.
Installing github package(s) ‘jtleek/genstats’
Downloading GitHub repo jtleek/genstats@gh-pages
Installing genstats
Skipping 1 packages not available: RSkittleBrewer
'/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file  \
  --no-environ --no-save --no-restore CMD INSTALL  \
  '/private/var/folders/q0/77608l192n98k852yv2lrdm80000gn/T/RtmpKGzfqP/devtools4a6434e085/jtleek-genstats-e60f9f0'  \
  --library='/Library/Frameworks/R.framework/Versions/3.2/Resources/library'  \
  --install-tests 

ERROR: dependency ‘RSkittleBrewer’ is not available for package ‘genstats’
* removing ‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library/genstats’
Error: Command failed (1)

> install.packages("RSkittleBrewer")
Warning in install.packages :
  package ‘RSkittleBrewer’ is not available (for R version 3.2.2)

Update to install instruction

Nice work here. Kindly take note that the source("http://bioconductor.org/biocLite.R") is deprecated and now BiocManager is used to install Biocmanager.

Verions and packages

Please indicate clearly which version of R and what additional packages are necessary for installation and usage.

Recommend Projects

React

A declarative, efficient, and flexible JavaScript library for building user interfaces.
Vue.js

🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript

TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
TensorFlow

An Open Source Machine Learning Framework for Everyone
Django

The Web framework for perfectionists with deadlines.
Laravel

A PHP framework for web artisans
D3

Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

javascript

JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
web

Some thing interesting about web. New door for the world.
server

A server is a program made to process requests and deliver data to clients.
Machine learning

Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Visualization

Some thing interesting about visualization, use data art
Game

Some thing interesting about game, make everyone happy.

Recommend Org

Facebook

We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft

Open source projects and samples from Microsoft.
Google

Google ❤️ Open Source for everyone.
Alibaba

Alibaba Open Source for everyone
D3

Data-Driven Documents codes.
Tencent

China tencent open source team.