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Name: Manoj Kumar Valluru
Type: User
Company: University of Sheffield
Bio: Postdoctoral Researcher @ Uni of sheffield
Twitter: mkvalluru
Location: Sheffield, UK
Name: Manoj Kumar Valluru
Type: User
Company: University of Sheffield
Bio: Postdoctoral Researcher @ Uni of sheffield
Twitter: mkvalluru
Location: Sheffield, UK
ADmiRE: Annotative Database of miRNA Elements
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Detection and visualization of annotated and potential Alternative Polyadenylation events
Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differential usage across RNA-seq samples
Program for the analysis and visualization of whole-slide images in digital pathology
A curated list of softwares, tools, pipelines, plugins etc. for image analysis related to biological questions.
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
List of software/websites/databases/other stuff for genome engineering
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
A curated list of awesome command-line frameworks, toolkits, guides and gizmos. Inspired by awesome-php.
Bioinformatics Awareness Days
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Toolkit to analyze genomic variation data, built on the GATK with Clojure
Barnes-Hut t-SNE
Conda recipes for the bioconda channel.
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
shiny application to generate box plots with R
Visualization package for Whippet.jl
Digital pathology image viewer with support for human/machine generated annotations and markups.
Enable cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format.
Image and VM management for Jenkins, Spark and Mesos clusters in EC2
Chanjo provides a better way to analyze coverage data in clinical sequencing.
End-to-End learning framework for circular RNA classification from other long non-coding RNA using multimodal deep learning
A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147)
circular RNA analysis toolset
A pipeline to map junction reads for circular intronic RNAs (ciRNAs)
An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs
Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).
a tool for identifying circular RNAs using RNA-Seq data
circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.