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abridge

An ultra compressor for SAM alignment files

amustaf5

Config files for my GitHub profile.

argyle

An R package for import, QC and analysis of Illumina Infinium genotyping arrays

atom

bdsd_2020

Using SVM Machine Learning in R

bin

scripts

bio-cigar

Parse CIGAR strings and translate coordinates to/from reference/query

cassiopeia

A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

coursera-r-programming

Notes from the R programming Coursera course

crispr_cas9

NGS data analysis scripts for HBV elimination research group

datasciencecoursera

datasharing

The Leek group guide to data sharing

eval

GeneCodeq - a novel approach for improving the compressibility of genomic datasets.

genstats

Statistics course for JHU Genomic Data Science Sequence

handy

hello-world

First repository

https-github.com-amustaf5-atom

intro_to_quest_online

online version of Introduction to Quest

ivrtyper

ivr locus allele determination from genomic data

nasa-grsd-hs.study

NASA HZE Radiation

ncannopy

numpy

Numpy main repository

omicia_api_examples

A collection of code snippets and programs to leverage the Omicia API for various tasks.

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

sars-cov-2_sequencing

SARS-CoV-2 Deep Sequencing

scims

seqfailr

Analysis of sequencing error profile for long read data.

sparkvcftools

VCFtools using Spark

sqantisim

SQANTISIM: a simulator of controlled novelty and degradation of transcripts sequenced by long-reads

sqlite-viewer

View SQLite file online