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Infectious Disease Sequencing Platform

Home Page: https://czid.org/

License: MIT License

Ruby 41.72% JavaScript 0.17% CSS 0.01% HTML 0.71% Shell 0.77% Python 0.32% Dockerfile 0.04% Awk 0.01% SCSS 4.59% TypeScript 51.53% Makefile 0.11% EJS 0.02%
infectious-diseases genomics sequencing metagenomic science next-generation-sequencing research biology virology bioinformatics

czid-web's Introduction

Infectious Disease Sequencing Platform

CZ ID is a hypothesis-free global software platform that helps scientists identify pathogens in metagenomic sequencing data.

  • Discover - Identify the pathogen landscape
  • Detect - Monitor and review potential outbreaks
  • Decipher - Find potential infecting organisms in large datasets

A collaborative open project of Chan Zuckerberg Initiative and Chan Zuckerberg Biohub.

Check out our repositories:

Check out our wiki for getting started with development in this repository and in CZ ID in general.

czid-web's People

Contributors

bchu1 avatar cdebourcy avatar charles-testco avatar cyrielo avatar davidrissato avatar dependabot[bot] avatar ehoops-cz avatar emilyzhong avatar gregdingle avatar irene-han avatar j-x-han avatar jameshowardwang avatar jfoo1984 avatar jshoe avatar lvreynoso avatar markazhang avatar morsecodist avatar nigel-smk avatar ninabernick avatar ohvillasenor avatar phoenixaja avatar rainandbare avatar robertaboukhalil avatar ryanking avatar rzlim08 avatar sidneymbell avatar tfrcarvalho avatar trevorb avatar valenzuelaomar avatar yunfangjuan avatar

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czid-web's Issues

Add new member with email - New IDseq User

If the email entered does not match any existing user in IDseq the user is given a chance to invite them to the tool.

By inviting a user to the tool their account is automatically created and they receive an email with an automatically generated password.

Add member information for Projects

After selecting a project and seeing all samples in the project the user should see three things in the right-hand corner:

  1. If the project is private (hidden) or public (visible)
  2. How many members are part of a project
  3. A button to add project members
    Project-page.png

Implement list of projects members on front end

Call the function 'Can Edit' to the front-end so we can see the member list for a project.
Call the function 'Can See' to the front-end so we can see the permission settings for a project.

Setup Airbrake for your Ruby application

Installation

Option 1: Bundler

Add the Airbrake Ruby gem to your Gemfile:

gem 'airbrake-ruby', '~> 2.4'

Option 2: Manual

Invoke the following command from your terminal:

gem install airbrake-ruby

Configuration

Just require the library and copy this configuration snippet into your Ruby project:
(You can find your project ID and API key with your project's settings)

require 'airbrake-ruby'

Airbrake.configure do |c|
  c.project_id = <Your project ID>
  c.project_key = '<Your project API KEY>'
end

Uncaught errors are automatically sent to Airbrake. Caught errors can be sent to Airbrake using the notify method:

begin
  1/0
rescue ZeroDivisionError => ex
  Airbrake.notify(ex)
end

Configuration

For in depth examples and advanced configuration options like error filtering or custom parameters, please visit our official GitHub repo.

"Project already exists or is invalid" is not removed upon change

On sample upload page, click "New Project". Enter a name that already exists: you get a red "project already exists or is invalid" message. Now click the button again and enter a valid name. It gets submitted correctly, but the red error message never disappears.

Setup Airbrake for your Ruby application

Installation

Option 1: Bundler

Add the Airbrake Ruby gem to your Gemfile:

gem 'airbrake-ruby', '~> 2.4'

Option 2: Manual

Invoke the following command from your terminal:

gem install airbrake-ruby

Configuration

Just require the library and copy this configuration snippet into your Ruby project:
(You can find your project ID and API key with your project's settings)

require 'airbrake-ruby'

Airbrake.configure do |c|
  c.project_id = <Your project ID>
  c.project_key = '<Your project API KEY>'
end

Uncaught errors are automatically sent to Airbrake. Caught errors can be sent to Airbrake using the notify method:

begin
  1/0
rescue ZeroDivisionError => ex
  Airbrake.notify(ex)
end

Configuration

For in depth examples and advanced configuration options like error filtering or custom parameters, please visit our official GitHub repo.

Setup Airbrake for your Ruby application

Installation

Option 1: Bundler

Add the Airbrake Ruby gem to your Gemfile:

gem 'airbrake-ruby', '~> 2.4'

Option 2: Manual

Invoke the following command from your terminal:

gem install airbrake-ruby

Configuration

Just require the library and copy this configuration snippet into your Ruby project:
(You can find your project ID and API key with your project's settings)

require 'airbrake-ruby'

Airbrake.configure do |c|
  c.project_id = <Your project ID>
  c.project_key = '<Your project API KEY>'
end

Uncaught errors are automatically sent to Airbrake. Caught errors can be sent to Airbrake using the notify method:

begin
  1/0
rescue ZeroDivisionError => ex
  Airbrake.notify(ex)
end

Configuration

For in depth examples and advanced configuration options like error filtering or custom parameters, please visit our official GitHub repo.

Setup Airbrake for your Ruby application

Installation

Using bundler

Add the Airbrake Ruby gem to your Gemfile:

gem 'airbrake-ruby', '~> 2.4'

Manual

Invoke the following command from your terminal:

gem install airbrake-ruby

Example

This is the minimal example that you can use to test Airbrake Ruby with your project (You can find your project ID and API KEY with your project's settings):

require 'airbrake-ruby'

Airbrake.configure do |c|
  c.project_id = <Your project ID>
  c.project_key = '<Your project API KEY>'
end

# Synchronous error delivery.
begin
  1/0
rescue ZeroDivisionError => ex
  # Return value is a Hash.
  response = Airbrake.notify_sync(ex)
end

puts 'A ZeroDivisionError was sent to Airbrake synchronously!',
     "See it at #{response['url']}\n"

# Asynchronous error delivery.
begin
  1/0
rescue ZeroDivisionError => ex
  Airbrake.notify(ex).then do |resp|
    puts 'A ZeroDivisionError was sent to Airbrake asynchronously!',
         "See it at #{resp['url']}"
  end
end

Airbrake.close

Configuration

For advanced configuration options like error filtering or custom parameters, please visit our official GitHub repo.

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