Name: Genomics Division, ITER
Type: User
Company: ITER
Bio: The area of Genomics of the Institute of Technology and Renewable Energy (ITER), at Tenerife, Canary Islands, SPAIN.
Location: Tenerife, Canary Islands, SPAIN
Blog: http://www.iter.es/
Genomics Division, ITER's Projects
analysis and plotting code for "Admixture into and within Africa" by George Busby et al 2016 (eLife)
R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
Benchmarking of causal germline variant prioritizers
Benchmarking of WGS and WES workflows from NGS reference data and reference samples sequenced at ITER
Overall management and deployment of the BRCA Exchange web portal and pipeline scripts
Workflows used in production at Broad for germline short variant discovery in WGS data
Sanity check Variant Call Format (VCF) files.
Manuscript describing ChronQC is now available online in Bioinformatics
📊 Circular and Rectangular Manhattan Plot
testing new contamination method
A public repository of scientific and media resources of SARS-CoV-2 related COVID-19
http://bioinformatics-core-shared-training.github.io/cruk-bioinf-sschool
A complete pipeline for cohort-oriented exome processing and annotation.
Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
A VCF filter for WGS data to filter FPs without losing too many TPs
Statistical tests performed by GATK on the variant calling
Description of a typical gVCF
End to end pipeline for calling variants against an entire genome
Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls
Fast genome analysis from unassembled short reads
Test
GWAS Survival Package in R