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20140411-dxjc-wgs-variant-calling

Presentation for DNAnexus journal club on Heng Li's WGS variant calling preprint

ai4sqlite3

Natural language query assistant for SQLite databases

appversion

AppVersion is a CLI tool whose purpose is to provide a unique manager of the version of you application.

atac-seq-pipeline

ENCODE ATAC-seq pipeline

bilm

Basic Indexed Line Matcher

blobxfer

AzCopy-like OS independent Azure storage blob and file share transfer tool

blogging-my-genome

DNAnexus platform applets for analyzing my genome, and associated notes

c9-ocaml

Installation script for OCaml and OPAM inside a Cloud9 IDE workspace

cde

CDE: Code, Data, and Environment packaging for Linux

chanzuckerberg.r-universe.dev

Configuration for publishing to R-Universe

cloud-workstation

Bootstrapping scripts for cloud workstation with mosh and x2go

cpython

The Python programming language

crf

OCaml library for semi-Markov conditional random fields

deepvariant-glnexus-wdl

WDL workflow for population variant calling using htsget, DeepVariant, and GLnexus

dna-me-pipeline

DCC/DAC methylation pipeline source

dx-ccle-fpkm

DNAnexus platform applets to calculate expression levels from CCLE RNA-Seq data

dx-ocaml

DNAnexus platform API bindings for OCaml

dxmaf

DNAnexus platform apps for working with MAF cross-species genome alignments

encode2

ENCODE-DNANexus collaboration

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

fluent-plugin-sumologic

forkwork

OCaml library for forking child processes to perform work on multiple cores

ft-index

TokuKV is a high-performance, transactional key-value store

ga4gh-schemablocks.github.io

Website of the GA4GH SchemaBlocks Project

genomicsqlite

Genomics Extension for SQLite

genomicsqlite-examples

gfa-spec

Graphical Fragment Assembly (GFA) Format Specification

gfabase

GFA insert into GenomicSQLite

glnext

Scalable gVCF merging and joint variant calling

glnexus

Scalable gVCF merging and joint variant calling for population sequencing projects