Won Cheol Yim's Projects
Code for analyzing REcount barcode sequencing data.
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
RNASeq_CSSI
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
A short tutorial on how to use RSEM
fork of RSeQC python RNAseq metrics suit of tools
Official website for Sanders Lab
:notebook: A reference guide to Linux command line, Vim and Scripting
Scripts to split reference and run mummer in parallel on an SGE cluster
Slice a text file (like FastQ) to smaller files by lines, with gzip supported
SmartThings open-source DeviceTypeHandlers and SmartApps code
A simple Snakemake profile for Slurm without --cluster-config
Class materials for the NIH HPC snakemake class
Mirror of analysis files for "Single-Cell RNA-Sequencing Reveals a Continuous Spectrum of Differentiation in Hematopoietic Cells"
Handbook for members of the SPIRAL group at Northeastern University.
SSH tutorial
Research Statements and Grants in Evolution/Ecology
Suite of analysis tools for spatial total RNA-sequencing
Python script(s) to calculate and plot transposable element annotations in GFF3 files, specifically generated by TEdenovo and TEannot outputs (Flutre et al., 2011; https://urgi.versailles.inra.fr/Tools/REPET)
Course materials for the IBioIC Introduction to Bioinformatics training course
Genetics training camp