Topic: multiplexed-imaging Goto Github
Some thing interesting about multiplexed-imaging
Some thing interesting about multiplexed-imaging
multiplexed-imaging,Rust library for reading imaging mass cytometry (IMC) data stored in .mcd files.
User: alanrace
multiplexed-imaging,Integrated pipeline for multiplexed image analysis
Organization: angelolab
Home Page: https://ark-analysis.readthedocs.io/en/latest/
multiplexed-imaging,Probabilistic topic model for identifying cellular micro-environments.
Organization: calico
multiplexed-imaging,astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
Organization: camlab-bioml
Home Page: https://astir.readthedocs.io/en/latest
multiplexed-imaging,Technology-invariant pipeline for spatial omics analysis (Xenium / MERSCOPE / CosMx / PhenoCycler / MACSima / Hyperion) that scales to millions of cells
Organization: gustaveroussy
Home Page: https://gustaveroussy.github.io/sopa/
multiplexed-imaging,SpatialVisVR is a VR platform tailored for advanced visualization and analysis of medical images in immuno-oncology. It allows real-time capture and comparison of mIF and mIHC images via mobile devices. Leveraging deep learning, it matches and displays similar images, supporting up to 100 protein channels.
User: jaiprakash1824
multiplexed-imaging,High-dimensional image preparation module for MIAAIM
User: joshuahess12
multiplexed-imaging,High-dimensional image registration workflow as part of the MIAAIM framework. Hdi-reg is written in Python, and utilizes the Elastix library for computations.
User: joshuahess12
multiplexed-imaging,General importing and utility functions for high-dimensional image data
User: joshuahess12
multiplexed-imaging,Multi-omics image alignment and analysis by information manifolds (MIAAIM)
User: joshuahess12
Home Page: https://joshuahess12.github.io/miaaim-python/
multiplexed-imaging,MIAAIM: Multi-omics Image Alignment and Analysis by Information Manifolds
User: joshuahess12
Home Page: https://joshuahess12.github.io/miaaim-python
multiplexed-imaging,A workflow designed to perform multiplexed image analysis, specialising in (but not limited to) analysis of metal distribution in LA-ICP-TOFMS data.
User: koellenspergerlab
Home Page: https://koellenspergerlab.univie.ac.at
multiplexed-imaging,Perform RESTORE normalization on multiplexed imaging data.
User: larry080201
multiplexed-imaging,Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
Organization: mahmoodlab
multiplexed-imaging,Rapid and efficient image preprocessing pipeline for multiplexed spatial proteomics. Code to compare several techniques to denoise Imaging Mass cytometry
User: marta-seq
Home Page: https://demirandalab-penguin.readthedocs.io/
multiplexed-imaging,HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇
User: mmasoud1
Home Page: https://mmasoud1.github.io/HistoJS/
multiplexed-imaging,An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
Organization: nf-core
Home Page: https://nf-co.re/mcmicro
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