Topic: mass-cytometry Goto Github
Some thing interesting about mass-cytometry
Some thing interesting about mass-cytometry
mass-cytometry,This repository extends scanpy to handle flow and mass cytometry data.
Organization: buettnerlab
mass-cytometry,A data-centric flow/mass cytometry automated analysis framework
User: burtonrj
Home Page: https://cytopy.readthedocs.io/en/latest/
mass-cytometry,Code for analysis of single cell signaling network kinetics from flow cytometry (CyTOF) datasets
User: dweth
mass-cytometry,A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.
Organization: immunedynamics
Home Page: https://immunedynamics.github.io/spectre/
mass-cytometry,Functions and scripts for analysing and normalising CyTOF data
User: jeffreypullin
mass-cytometry,Single Cell Outlier Selector - quickly find outliers in your single-cell data
User: jfaccioni
mass-cytometry,Opens two or more FCS files and creates new files that contain only the Channels common to all.
User: jimbomahoney
mass-cytometry,R Script for reading CyTOF or flow cytometry data (FCS) and generating plots like Cytobank
User: jimbomahoney
mass-cytometry,R script for summarising paramater / channel intensity from flow or mass cytometry data
User: jimbomahoney
mass-cytometry,Plots log histograms of FCS files like CyTOF's PlotViewer program
User: jimbomahoney
mass-cytometry,Fast auto-cleanup of CyTOF data
User: jimbomahoney
mass-cytometry,Very fast method to read number of events from some / all FCS files in a directory
User: jimbomahoney
mass-cytometry,Plots the MDS (Multi-dimensional scaling) of 3 or more FCS files.
User: jimbomahoney
mass-cytometry,Plots the NRS (non-redundancy score) of selected markers from one or more FCS files
User: jimbomahoney
mass-cytometry,R Script to plot the average event rate in flow or mass cytometry (FCS) files
User: jimbomahoney
mass-cytometry,A handy spreadsheet for looking up elemental isotopes by symbol or mass.
User: jimbomahoney
mass-cytometry,Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation
Organization: lance-waller-lab
mass-cytometry,Huge-scale, high-performance flow cytometry clustering in Julia
Organization: lcsb-biocore
Home Page: http://git.io/GigaSOM.jl
mass-cytometry,R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
User: lmweber
mass-cytometry,An archived version of the cydar repository, see https://github.com/MarioniLab/cydar for the active version.
Organization: marionilab
mass-cytometry,Code and manuscript files for Aaron and Arianne's differential abundance methodology manuscript.
Organization: marionilab
mass-cytometry,Rapid and efficient image preprocessing pipeline for multiplexed spatial proteomics. Code to compare several techniques to denoise Imaging Mass cytometry
User: marta-seq
Home Page: https://demirandalab-penguin.readthedocs.io/
mass-cytometry,Novel ultrafast suite for high-throughput & high-content multiparameter screening as in drug discovery. It has unique modules for QC, bias correction, similarity measurement, clustering and visualization. It can process hundreds of samples with many markers in a few hours not days & circumvents bath effect. It couples with any plate reader.
User: morchalabi
Home Page: https://github.com/morchalabi/COMPARE-suite/wiki/COMPARE-Suite
mass-cytometry,R package to cluster single-cell data and generate features that can be used for model building
Organization: parkerici
mass-cytometry,R package for interactive visualization and analysis of single-cell data
Organization: parkerici
mass-cytometry,R package for pre-processing of mass and flow cytometry data
Organization: parkerici
mass-cytometry,R package for analysis of single-cell data using graphs
Organization: parkerici
mass-cytometry,Batch effect correction and automated gating of CyTOF data
User: simeongeorgiev
mass-cytometry,Hierarchical Nearest Neighbor Descent, In-Tree, and Clustering (Teng Qiu, Yongjie Li, Pattern Recognition, 2023)
User: teng-qiu-clustering
mass-cytometry,Official implementation of GateNet
Organization: wwu-mmll
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