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License: GNU Affero General Public License v3.0
Improving genome bins through the combination of different binning programs
License: GNU Affero General Public License v3.0
Hi,
I have been using binning refiner and it gives very good output. But I wonder if at some point it is going to be possible to use the output from more than 3 different binning softwares.
Thanks in advance.
Hello,
I get these messages running binning_refiner, i don't seed how i could fix it, please help !
[2021-07-28 17:30:37] Detected 2 input bin folders
[2021-07-28 17:30:37] Read in 419 large bins
[2021-07-28 17:32:25] Read in 422 sensitive bins
[2021-07-28 17:34:07] Refine input bins
[2021-07-28 17:34:10] Got 0 refined bins with size larger than 512 Kbp
[2021-07-28 17:34:10] Extract sequences for refined bins
[2021-07-28 17:34:10] Prepare Sankey plot
essai de l'URL 'https://cloud.r-project.org/src/contrib/googleVis_0.6.10.tar.gz'
Content type 'application/x-gzip' length 574143 bytes (560 KB)
==================================================
downloaded 560 KB
* installing *source* package ‘googleVis’ ...
** package ‘googleVis’ correctement décompressé et sommes MD5 vérifiées
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’
** testing if installed package can be loaded from final location
Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’
** testing if installed package keeps a record of temporary installation path
* DONE (googleVis)
The downloaded source packages are in
‘/tmp/RtmpEm3QIW/downloaded_packages’
Error in gvis(type = type, checked.data, options = options, chartid = chartid, :
Only the following data types are allowed: number, string
However, C1, C2, Length_Kbp is of type boolean, boolean, boolean
Calls: gvisSankey -> gvisChart -> gvis
Exécution arrêtée
[2021-07-28 17:34:22] Done!
mewu3
Dear,
As described in your paper, "The bins from each binning program are then combined into one file and a pairwise blastn (Altschul et al., 1990) is performed between the two combined files". But it seems that blastn
is only used in the version 1.0 and not in latest version. Is there any documentation to explain this change?
Thank you.
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