rec3141 Goto Github PK

ag_thesis

bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

bbpipe-snakemake

biol342

biom-format

The Biological Observation Matrix (BIOM) Format Project

cs228-material

Teaching materials for the probabilistic graphical models and deep learning classes at Stanford

daxter

Automatically exported from code.google.com/p/daxter

ddmp

Digital Database of Microbial Phenotypes. Like an online Bergey's Manual.

demult

first crack at a demultiplexer for variable length dual indexed barcodes, wrapper for tagdust

diversity-scripts

dosnes

Doubly Stochastic Neighbor Embedding on Spheres

earth

a project to visualize global weather conditions

ebi-metagenomics

Automatically exported from code.google.com/p/ebi-metagenomics

eeg2016

Ecological and Evolutionary Genomics 2016

fit-sne

Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)

gcamel

G+C Content Amelioration

genome-scripts

Genome Scripts used in fungal comparative genomics

genomic-signatures-of-ogt-2020-

hgtbaab

scripts for Fuchsman et al. manuscript on Horizontal Gene Transfer Between Archaea And Bacteria

hima

A Meta-database of Low Temperature Genomes and Metagenomes

image_classifier_application

image_classifier_pytorch

This is the repo for the Free Code Camp article, "How to build an image classifier with greater than 97% accuracy." Classifier utilizes Python, PyTorch, Numpy, Matplotlib, Seaborn, JSON, and PIL.

kraken

Kraken taxonomic sequence classification system

longest-repeats

finding the longest repeats in bacterial genomes

mail2cli

run shell commands from an email attachment

mccortex

Cortex on steroids: for larger populations with better assembly

mds-mountain

metta

metagenome assembly, binning, and visualization

microbial-phenotype-database

Automatically exported from code.google.com/p/microbial-phenotype-database

microscape

Visualizing Microbial Landscapes