druvus Goto Github PK

16s-demultiplexing

abruijn

Long read assembly via A-Bruijn graph

allbiotc2

Benchmark pipeline for Structural Variation analyses, funded by the ALLBio

amplicon-classifier

Handling CanSNP based classification of custom marker sets

amptk

AMPtk: Amplicon ToolKit for NGS data (formally UFITS)

autoconf-feedstock

A conda-smithy repository for autoconf.

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bgt

Flexible genotype query among 30,000+ samples whole-genome

bioconda-recipes

Conda recipes for the bioconda channel.

bioconda-utils

Utilities for building and managing bioconda recipes

bottle-feedstock

A conda-smithy repository for bottle.

bpipe

bpipe-scripts

This repository contains the various bpipe scripts to handle NGS data.

cansnper

A hierarchical genotype classifier of clonal pathogens

ccmetagen

Microbiome classification pipeline

centrifuge

Classifier for metagenomic sequences

cherrypy-feedstock

A conda-smithy repository for cherrypy.

cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

colocalisation

Script to calculate colocalisation of microscope data

dazz_db

The Dazzler Data Base

deltabs

Quantifying the significance of genetic variation using probabilistic profile-based methods.

doepipeline

A python package for optimizing processing pipelines using statistical design of experiments (DoE).

druvus.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

family-based-smoothed-fpca

fieldbioinformatics

The ARTIC field bioinformatics pipeline

flexidot

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

genome_update

A package for downloading genomes (.fna .gbff .gff) from NCBI assembly_summary. Uses yaml to store information about local genomes.

gravitropism-plot

Script to plot gravitropism data

hsph-scripts

Small useful scripts

imagemagick-feedstock

A conda-smithy repository for imagemagick.