Comments (2)
the full sequence can be whatever you want (it's just a label). the base sequence must be composed of only amino acids, and it's best if you can get as close to the real composition of the molecule as possible. though it will still work if you put in a dummy sequence (it will use mostly averagine). so you could just put something like "G" for every base sequence, or you could put in the alpha+beta peptide sequences mashed together. both would work reasonably well I think
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Will do, thanks!
D.
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Related Issues (20)
- Support for Percolator output files HOT 77
- Advice on parameter setting HOT 10
- RT alignment? HOT 2
- Support for more conditions
- FlashLFQ normalization issue HOT 8
- setting up license on linux HOT 2
- FlashLFQ crashed HOT 1
- extra trailing tab in output HOT 1
- will/does it support timsTOF data? HOT 1
- Question about quantification
- crashed - invalid parametrization for the distribution HOT 6
- Enquiry on where the actual namespace for FlashLFQ exists HOT 2
- Question about using with PeptideShaker HOT 3
- No Posterior Error Probability in Bayesian Protein Fold Change Analysis in Command Line tool
- Problem with file name excluding format extension HOT 5
- Shared peptide quantification
- mzML quant error : Index was outside the bounds of the array. HOT 8
- Could not run in Mac OS 13.6
- Header of output file(s) HOT 2
- Remove extra tab from header
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