Comments (5)
trishorts
commented on August 17, 2024
It should be robust to that but I will have to double check. Is there any way that you could share the psm file and at least one raw file so that I can reproduce the error? Then I will fix it. Thanks.
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ClaSofMag
commented on August 17, 2024
Sure, thank you. Here:
Default PSM Report.txt
Link for raw file: https://ualg365-my.sharepoint.com/:i:/g/personal/csraposo_ualg_pt/EWnRq3CgWF9Gtd9qIW-4GPEBXN2H6Vqp27YOGfMwa7gwow?e=1r0PAh
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trishorts
commented on August 17, 2024
FlashLFQ can handle some instances of multiple .s but your presents a funny case. In the peptide shaker output it thinks the .3 is the file extension. The easiest solution is to add .raw to all the text in the column labeled "Spectrum File". Will you give that a try please? I did the relabeling on the file you sent to me. maybe you could try it?
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trishorts
commented on August 17, 2024
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ClaSofMag
commented on August 17, 2024
That worked perfectly! Thank you for your help
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Related Issues (20)
- Support for Percolator output files HOT 77
- Advice on parameter setting HOT 10
- RT alignment? HOT 2
- Support for more conditions
- FlashLFQ normalization issue HOT 8
- setting up license on linux HOT 2
- FlashLFQ crashed HOT 1
- extra trailing tab in output HOT 1
- will/does it support timsTOF data? HOT 1
- Question about quantification
- crashed - invalid parametrization for the distribution HOT 6
- Enquiry on where the actual namespace for FlashLFQ exists HOT 2
- Question about using with PeptideShaker HOT 3
- No Posterior Error Probability in Bayesian Protein Fold Change Analysis in Command Line tool
- Shared peptide quantification
- mzML quant error : Index was outside the bounds of the array. HOT 8
- Could not run in Mac OS 13.6
- Header of output file(s) HOT 2
- Remove extra tab from header
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