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trishorts avatar trishorts commented on August 17, 2024

i don't have a ready answer. i posted an issue on the peptide shaker github
compomics/peptide-shaker#507

from flashlfq.

trishorts avatar trishorts commented on August 17, 2024

this comment by the peptide shaker team:
There is a section in our tutorial material on how to export data from PeptideShaker in different formats. Please check out pages 35 to 39 of Chapter 1.4 - Browsing Identification Results.

from flashlfq.

justmpm avatar justmpm commented on August 17, 2024

Hi,
There is no way that I can find, even using the tutorial, to export a .tabular. However, I did find that both Export->Identification Features->Default PSM Report is compatible with FlashLFQ. So is Export->Identification Features->Extended PSM Report. The native .txt file exported by PeptideShaker is fine, no need to change the file name to end with .tabular.

Thanks for your help!
Cheers
Mike

from flashlfq.

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